View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14464_low_7 (Length: 476)

Name: NF14464_low_7
Description: NF14464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14464_low_7
NF14464_low_7
[»] chr1 (1 HSPs)
chr1 (7-441)||(304117-304556)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 304117 - 304556
Alignment:
Q  7 ggacatcatcagcttggattgtttaaaaattaaaataatatggaaatgaaaggcatctgatagtccattccaaccaatannnnnnnnnnnnnnnnnnnnn 106  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         
T  304117 ggacctcaacagcttggattgtttaaaaattaaaataatatggaaatgaaaggcatctgatagtccattccaaccaatacctccctctctccctcctcct 304216  T
Q  107 nnnnatttcttctgaattgtagaaccattttattccattccataatccagnnnnnnn--ctttcattccataataacaatatccaaagaatcatgacaca 204  Q
        ||||||||||||| |||||||||||||||||||||||||||||||          |||||  | |||||||| |||||||||||||||||||||||    
T  304217 tctcatttcttctgaatggtagaaccattttattccattccataatccaagttttttttctttcgattcataataaaaatatccaaagaatcatgacaca 304316  T
Q  205 ccattccttcaatcaacatccatttcacttcactcaacattacaaatttacaatattcaaacatatcccaagcaaaaccttacaattactactaaagaaa 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| || || ||  ||    
T  304317 ccattcattcaatcaacatccatttcacttcactcaacattacaaatttacaacattcaaacatctcgcaagcaaaaccttacaattcctcctcaatcaa 304416  T
Q  305 tgaaggtcatttcctannnnnnnnn---aaacaagaagccatttcctttgttaaattcaatataacacatttatctaatattcggaaatatatcccaaaa 401  Q
    |||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  304417 tgaaggtcatttccttttttttttttttaaacaagaagccatttcctttgttaaattcaatataacacatttatctaatatacggaaatatatcccaaaa 304516  T
Q  402 aatcatttggtgatccacaaaccaaatgcagcagttcaaa 441  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  304517 aatcatttggtgatccacaaaccaaatgcagcagttcaaa 304556  T

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