View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14465_high_1 (Length: 397)
Name: NF14465_high_1
Description: NF14465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14465_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 5 - 381
Target Start/End: Complemental strand, 46176003 - 46175627
Alignment:
| Q |
5 |
taatactttaccatagaatttagaaacatgattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtacttctttggtaatcttag |
104 |
Q |
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| T |
46176003 |
taatactttaccatagaatttagaaacatgattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtacttctttggtaatcttag |
46175904 |
T |
|
| Q |
105 |
tttgagacttagaatttagaaagatagtgagtgttcagttctaacaactatattttttctttgacagaaaattgtgctaaagttggagattcatgaagac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46175903 |
tttgagacttagaatttagaaagatagtgagtgttcagttctaacaactatattttttctttgacagaaaattgtgctaaagttggagattcatgaagac |
46175804 |
T |
|
| Q |
205 |
aaaatcaaacaaaaagctatgaaggcagtctctggcctctcaggtaaagnnnnnnnnttccattgattatgtagcatcaatatcaatgttgtgtgcggtc |
304 |
Q |
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| T |
46175803 |
aaaattaaacaaaaagctatgaaggcagtctctggcctctcaggtaaagaaaaaaaattccattgattatgtaacatcaatatcaatgttgtgtgcggtc |
46175704 |
T |
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| Q |
305 |
acaatcttaggactgcacaaacttagtcatatattaaactaaattcgatattttagatttataaaataaaataaaat |
381 |
Q |
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| T |
46175703 |
acaatcttaggactgcacacacttagtcatatattagactaaattcgatattttagatttaaaaaataaaataaaat |
46175627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 34 - 376
Target Start/End: Complemental strand, 45043869 - 45043526
Alignment:
| Q |
34 |
gattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtacttctttggtaatcttagtttgagacttagaatttagaaagatagtg |
133 |
Q |
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| T |
45043869 |
gattggtaaattttccttttcttatgcacaatttcaagcctaaagttgaagtacttctttggtaatcttagtttgagacttagaatttagaaagatagtg |
45043770 |
T |
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| Q |
134 |
agtgttcagttctaacaactatattttttctttgacagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagt |
233 |
Q |
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| T |
45043769 |
agtgtacagttctaacaactagattttttctttaacagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagt |
45043670 |
T |
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| Q |
234 |
ctctggcctctcaggtaaag-nnnnnnnnttccattgattatgtagcatcaatatcaatgttgtgtgcggtcacaatcttaggactgcacaaacttagtc |
332 |
Q |
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| T |
45043669 |
ctctggcctttccggtacagaaaaaaaaattctattgatcatataccatcaatatcaatgtcatgtgcagtcaaaatctcatgactgcacgcagttagcc |
45043570 |
T |
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| Q |
333 |
atatattaaactaaattcgatattttagatttataaaataaaat |
376 |
Q |
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||||| || | ||| |||| ||||||||| ||| |||||||||| |
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| T |
45043569 |
atatactagattaagttcggtattttagaattaaaaaataaaat |
45043526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 45041710 - 45041579
Alignment:
| Q |
121 |
tagaaagatagtgagtgttcagttctaacaactatat--tttttctttgacagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaa |
218 |
Q |
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|||||||| |||||||||||||| ||||||| || | |||||| ||||||||| ||||| |||||||||| || ||||||| | |||||| ||||| |
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| T |
45041710 |
tagaaagaaagtgagtgttcagtgctaacaaatacttgatttttccatgacagaaagttgtgttaaagttggaaataaatgaagatagaatcaagcaaaa |
45041611 |
T |
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| Q |
219 |
agctatgaaggcagtctctggcctctcaggta |
250 |
Q |
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| T |
45041610 |
ggctatgaaggcagtctctggcctttcaggta |
45041579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 45036375 - 45036293
Alignment:
| Q |
168 |
acagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctctcaggta |
250 |
Q |
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| T |
45036375 |
acagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
45036293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 17862146 - 17862091
Alignment:
| Q |
196 |
catgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctctcaggtaa |
251 |
Q |
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| T |
17862146 |
catgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaa |
17862091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 17872720 - 17872666
Alignment:
| Q |
197 |
atgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctctcaggtaa |
251 |
Q |
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|||| |||| || ||| ||||||||||||||| ||||||||||||| |||||||| |
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| T |
17872720 |
atgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaa |
17872666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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