View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14465_high_2 (Length: 245)

Name: NF14465_high_2
Description: NF14465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14465_high_2
NF14465_high_2
[»] chr3 (4 HSPs)
chr3 (1-232)||(11897174-11897405)
chr3 (19-232)||(26432588-26432801)
chr3 (47-131)||(23424570-23424654)
chr3 (40-89)||(49149802-49149851)
[»] chr8 (3 HSPs)
chr8 (1-241)||(23132466-23132706)
chr8 (40-131)||(26587289-26587380)
chr8 (69-227)||(14760016-14760174)
[»] chr1 (4 HSPs)
chr1 (1-232)||(20284875-20285106)
chr1 (31-140)||(50236550-50236659)
chr1 (47-128)||(50451967-50452048)
chr1 (31-89)||(23465403-23465461)
[»] chr2 (11 HSPs)
chr2 (1-232)||(14653570-14653801)
chr2 (31-140)||(16322502-16322611)
chr2 (52-125)||(35135219-35135292)
chr2 (52-125)||(40328252-40328325)
chr2 (52-125)||(3779048-3779121)
chr2 (52-128)||(573266-573342)
chr2 (21-128)||(26791364-26791471)
chr2 (47-133)||(42403209-42403295)
chr2 (52-113)||(19265490-19265551)
chr2 (28-128)||(177549-177649)
chr2 (77-128)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (38-128)||(75967-76057)
[»] chr5 (3 HSPs)
chr5 (22-128)||(32874457-32874563)
chr5 (53-128)||(7817210-7817285)
chr5 (31-133)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (19-125)||(54477407-54477513)
chr4 (28-131)||(46784469-46784572)
chr4 (47-128)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (31-131)||(24990660-24990760)
chr6 (47-131)||(24893833-24893917)
chr6 (21-128)||(27852952-27853059)
chr6 (31-137)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (31-134)||(16769956-16770059)
chr7 (31-130)||(27781628-27781727)
chr7 (55-125)||(1353794-1353864)
chr7 (40-128)||(1579159-1579247)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11897174 - 11897405
Alignment:
Q  1 tgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtcccctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897174 tgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtcccctt 11897273  T
Q  101 atcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacggggccgca 200  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11897274 atcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcacccatccaaatcacccctacggggccgca 11897373  T
Q  201 tttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||||||||||||||||||||||||||||||    
T  11897374 tttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26432801 - 26432588
Alignment:
Q  19 tactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 118  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  26432801 tactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatccattgtccccttatctcttcatcatttgca 26432702  T
Q  119 tggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacggggccgcatttatcccatctcctatt 218  Q
    |||||||||| || |||||||| ||||| || |||  |||||||||||||| ||| || |||||||| ||||||||||||||||||||||| ||||| ||    
T  26432701 tggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccgattcaaatcactcctacggggccgcatttatcccacctcctttt 26432602  T
Q  219 tgcagatgatgtcc 232  Q
    |||| |||||||||    
T  26432601 tgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  47 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 131  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  40 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 89  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 23132706 - 23132466
Alignment:
Q  1 tgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtcccctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23132706 tgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatacgttgtcccctt 23132607  T
Q  101 atcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacggggccgca 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  23132606 atcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccctacggggcccca 23132507  T
Q  201 tttatcccatctcctatttgcagatgatgtccatctcattt 241  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  23132506 tttatcccatctcctatttgcagatgatgtccttcttattt 23132466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 26587289 - 26587380
Alignment:
Q  40 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 131  Q
    ||||| ||||| || ||||||||| |||||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |||||    
T  26587289 aacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaactttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  69 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgg 168  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  169 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 227  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

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Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20284875 - 20285106
Alignment:
Q  1 tgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtcccctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  20284875 tgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcctgcgacaaggtgatccgttgtcccctt 20284974  T
Q  101 atcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacggggccgca 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20284975 atcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccctacggggccgca 20285074  T
Q  201 tttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||||||||||||||||||||||||||||||    
T  20285075 tttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 50236659 - 50236550
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |    
T  50236659 tggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactat 50236560  T
Q  131 cagctgctat 140  Q
    ||| ||||||    
T  50236559 cagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 50451967 - 50452048
Alignment:
Q  47 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451967 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 89  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14653801 - 14653570
Alignment:
Q  1 tgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtcccctt 100  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14653801 tgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcctccaacaaggtgatccgttgtcccctt 14653702  T
Q  101 atcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatccaaatcacccctacggggccgca 200  Q
    || ||||||||||||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  14653701 attttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcacccatccaaatcactcctacggggccgca 14653602  T
Q  201 tttatcccatctcctatttgcagatgatgtcc 232  Q
    ||||||||||||||||||||||||||||||||    
T  14653601 tttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  131 cagctgctat 140  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 35135292 - 35135219
Alignment:
Q  52 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    |||||||||||| ||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135292 cctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 40328252 - 40328325
Alignment:
Q  52 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    |||||||||||| ||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328252 cctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 3779121 - 3779048
Alignment:
Q  52 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779121 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  52 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 26791364 - 26791471
Alignment:
Q  21 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 120  Q
    |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| | || ||||||||| | ||||| || ||||| || |||||||||    
T  26791364 ctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggcagggtgatccgctttccccgtacctttttattctttgcatg 26791463  T
Q  121 gaaaagct 128  Q
    || |||||    
T  26791464 gagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  47 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 133  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 19265490 - 19265551
Alignment:
Q  52 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 113  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265490 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 177549 - 177649
Alignment:
Q  28 ctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 127  Q
    |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  |||||||||| || ||||| ||||| || |||||| | |||||||||||||    
T  177549 ctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaaggtgaccctttgtctccttacctattcatcatctgcatggaaaagc 177648  T
Q  128 t 128  Q
    |    
T  177649 t 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  77 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  38 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  22 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 121  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  122 aaaagct 128  Q
    |||||||    
T  32874463 aaaagct 32874457  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 7817210 - 7817285
Alignment:
Q  53 ctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    ||||||||||| ||||||| ||| |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817210 ctttcaagcctactcatggtctcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 6641110 - 6641008
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    |||||||| |||||  || | |||||||||||  |||||||||||||| ||||||||||| | || || || || |||||  | ||||||||||| ||||    
T  6641110 tggaacggaaacaaaatgtcccctttcaagcccactcatggcctccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaacttt 6641011  T
Q  131 cag 133  Q
    |||    
T  6641010 cag 6641008  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 54477513 - 54477407
Alignment:
Q  19 tactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 118  Q
    |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| || || ||||||||||| |||||||||||||| ||||| |||||||    
T  54477513 tactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatcctttgtccccttatctcttcattctttgca 54477414  T
Q  119 tggaaaa 125  Q
    |||||||    
T  54477413 tggaaaa 54477407  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 46784572 - 46784469
Alignment:
Q  28 ctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 127  Q
    |||||||| || || || |||||||||||||| ||| ||||||||||  |||||||||||||  | || || || || ||||||||||||||| |||| |    
T  46784572 ctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaac 46784473  T
Q  128 tttc 131  Q
    ||||    
T  46784472 tttc 46784469  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  47 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  131 c 131  Q
    |    
T  24990660 c 24990660  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 24893917 - 24893833
Alignment:
Q  47 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 131  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893917 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  21 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 120  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||||||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  121 gaaaagct 128  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  131 cagctgc 137  Q
    |||||||    
T  13599739 cagctgc 13599745  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  131 cagc 134  Q
    ||||    
T  16769959 cagc 16769956  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 27781727 - 27781628
Alignment:
Q  31 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 130  Q
    ||||||||||||||  |||| || || |||||  ||||||||||| |||||||||| ||  | || ||||| || |||||||| |||||||| |||||||    
T  27781727 tggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagcttt 27781628  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 1353864 - 1353794
Alignment:
Q  55 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 125  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  1353864 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 1353794  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 1579247 - 1579159
Alignment:
Q  40 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 128  Q
    ||||||||||| || ||  | ||| ||||||| ||| |||| ||||||||| | |||||||| || || || |||||||||||||||||    
T  1579247 aacaagttgcctccctttcatcctactcatgggctcagacagggtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

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