View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14465_low_2 (Length: 298)

Name: NF14465_low_2
Description: NF14465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14465_low_2
NF14465_low_2
[»] chr4 (14 HSPs)
chr4 (19-173)||(5551831-5551985)
chr4 (57-157)||(3747594-3747694)
chr4 (44-157)||(5563397-5563510)
chr4 (45-154)||(5856751-5856860)
chr4 (55-164)||(5557605-5557714)
chr4 (70-164)||(5612206-5612300)
chr4 (19-154)||(5854423-5854563)
chr4 (46-166)||(5896538-5896658)
chr4 (57-164)||(5849476-5849583)
chr4 (57-156)||(5887698-5887797)
chr4 (77-164)||(5604088-5604175)
chr4 (115-169)||(5890816-5890870)
chr4 (78-164)||(5572654-5572740)
chr4 (78-164)||(5584861-5584947)
[»] chr8 (1 HSPs)
chr8 (117-164)||(1481830-1481877)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 5551985 - 5551831
Alignment:
Q  19 tcatccacacacgaaacaaagattgctcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatctt 118  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5551985 tcatccacacgcgaaacaaagactgctcatactatcaggatagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatctt 5551886  T
Q  119 cacagccattgatttctcatccaatcattttgaaggaccgataccacaggttctg 173  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5551885 cacagccattgatttctcatccaatcattttgaaggaccaataccacaggttctg 5551831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 3747694 - 3747594
Alignment:
Q  57 gatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggac 156  Q
    ||||||||||||||||| | |||||||||  | ||| |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  3747694 gatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggac 3747595  T
Q  157 c 157  Q
    |    
T  3747594 c 3747594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 5563510 - 5563397
Alignment:
Q  44 ctcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaat 143  Q
    |||||| ||| |||||||| |||| ||||| ||||||||||| || ||  |||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  5563510 ctcatattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaattttaaaaatcttcacagccattgatttatcatccaat 5563411  T
Q  144 cattttgaaggacc 157  Q
    ||||||||||||||    
T  5563410 cattttgaaggacc 5563397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 5856860 - 5856751
Alignment:
Q  45 tcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatc 144  Q
    ||||| ||| |||||||||||||  |||| | ||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||| ||||||||||    
T  5856860 tcatattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatcttcacagccattgatttatcatccaatc 5856761  T
Q  145 attttgaagg 154  Q
    ||||||||||    
T  5856760 attttgaagg 5856751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 5557714 - 5557605
Alignment:
Q  55 aggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaagg 154  Q
    ||||||||| ||| ||||| | ||||||||  |||||| ||||||||||||||||| |||| || ||| ||||||| |||||||||||||||||||||||    
T  5557714 aggatagtgcgacagtttccaataaaggtcgacaaatggagttggttaaaattctaacaatatttacaaccattgacttctcatccaatcattttgaagg 5557615  T
Q  155 accgatacca 164  Q
    ||| ||||||    
T  5557614 accaatacca 5557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 5612300 - 5612206
Alignment:
Q  70 tttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 164  Q
    |||||| |||||||||  | |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| ||||||||||| ||||||    
T  5612300 tttctactaaaggtcaagagatgaagttggttaaaattctaaaaatcttcatggccattgatttctcatccaatcactttgaaggaccaatacca 5612206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 5854423 - 5854563
Alignment:
Q  19 tcatccacacacgaaacaaagattgctcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagc-----a 113  Q
    |||||||||| | ||| ||||| | | |||| ||| |||||| |||||| ||||| | |||||||||| | ||||||||||||||||||||| |     |    
T  5854423 tcatccacacgctaaagaaagactacacatattatcaggatactgtgacagtttccaataaaggtcaggagatgaagttggttaaaattctaacaatata 5854522  T
Q  114 atcttcacagccattgatttctcatccaatcattttgaagg 154  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  5854523 atcttcacagcgattgatttctcatccaatcatttcgaagg 5854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 5896538 - 5896658
Alignment:
Q  46 catactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatca 145  Q
    |||| ||| |||||||||||||  |||||| |||||||||    ||| ||||| |||||||| || ||||||| |||||||||||||||||||| |||||    
T  5896538 catattatcaggatagtgtgacaatttctactaaaggtcaagtgatgcagttgcttaaaattttaacaatctttacagccattgatttctcatcaaatca 5896637  T
Q  146 ttttgaaggaccgataccaca 166  Q
    ||| |||||||| ||||||||    
T  5896638 tttcgaaggaccaataccaca 5896658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 5849476 - 5849583
Alignment:
Q  57 gatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggac 156  Q
    ||||||||||| ||||| | |||||||||  |||| |||| ||  |||||||||  |||||| ||||||||||||||||||||||||||||| |||||||    
T  5849476 gatagtgtgaccgtttccaataaaggtcaaaaaattaagtaggaaaaaattctaaaaatctttacagccattgatttctcatccaatcatttcgaaggac 5849575  T
Q  157 cgatacca 164  Q
    | ||||||    
T  5849576 caatacca 5849583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 5887698 - 5887797
Alignment:
Q  57 gatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggac 156  Q
    ||||||||||| ||||| | |||||||||  || | ||||  | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5887698 gatagtgtgacagtttccaataaaggtcaagaacttaagtatgataaaattctaacaatctttacagccattgatttctcatccaatcattttgaaggac 5887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 5604175 - 5604088
Alignment:
Q  77 taaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 164  Q
    ||||||||| |||||| ||||||||||||||||| |||| | ||||| ||||||||||||||||||   |||||||||||| ||||||    
T  5604175 taaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaatacca 5604088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 5890816 - 5890870
Alignment:
Q  115 tcttcacagccattgatttctcatccaatcattttgaaggaccgataccacaggt 169  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  5890816 tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggt 5890870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 5572654 - 5572740
Alignment:
Q  78 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 164  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5572654 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 5584861 - 5584947
Alignment:
Q  78 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 164  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5584861 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5584947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 1481877 - 1481830
Alignment:
Q  117 ttcacagccattgatttctcatccaatcattttgaaggaccgatacca 164  Q
    |||||| |||||||||||||||||||||| |||||||||  |||||||    
T  1481877 ttcacaaccattgatttctcatccaatcactttgaaggattgatacca 1481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University