View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14465_low_3 (Length: 263)
Name: NF14465_low_3
Description: NF14465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14465_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 6457573 - 6457810
Alignment:
| Q |
5 |
gtatataacaataaaagaaaatagaaggcctctttcaggatatggaccatgacttttagttaggcaaaataggaccccatttgggaccttaaattggaca |
104 |
Q |
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| T |
6457573 |
gtatataacaataaaagaaaatagaaggcctctttcaggatatggaccatgacttttagttaggcaaaataggaccccatttgggaccttaaattggaca |
6457672 |
T |
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| Q |
105 |
tgtgggtcaagtttcatgccacagtactagctatcataacatcgttctcatcatatatgaaacgttccaagaggtttgtagattgaggttagcacttcga |
204 |
Q |
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| T |
6457673 |
ggtgggtcaagtatcatgccacagtactagctatcataacatcgttctcatcatatatgtaacgttccaagaggtttgtagattgaggttagcacttcga |
6457772 |
T |
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| Q |
205 |
ccaaaaaataaaagattgatgttggcataaattattaa |
242 |
Q |
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| T |
6457773 |
ccaaaaaataaaagattgatgttggcataaattattaa |
6457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 6594649 - 6594598
Alignment:
| Q |
9 |
ataacaataaaagaaaatagaaggcctctttcaggatatggaccatgacttttag |
63 |
Q |
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||||||| |||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
6594649 |
ataacaacaaaagaaaatagaaggcc---ttgaggatatggactatgacttttag |
6594598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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