View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_high_1 (Length: 758)
Name: NF14466_high_1
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 659; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 16 - 742
Target Start/End: Original strand, 3563006 - 3563731
Alignment:
| Q |
16 |
ctaaattggttccttgcaaaccaaatggtcctcatgatatttataattgcagctaaaaccaccactttgcattgttgagaccaagatctatcacacagtt |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563006 |
ctaaattggttccttgcaaaccaaatggtactcatgatatttataattgcagctagaaccaccactttgcattgttgagaccaagatctatcacacagtt |
3563105 |
T |
|
| Q |
116 |
tccatatgttctccatggattgaaagtgtagattactatcaaggactgatgccaaccagcaccataaatcaaatgcgaaattacactnnnnnnnnngatg |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3563106 |
tccatatgtcctccatggattgaaagtgtagattactatcaaggactgatgccaaccagcaccataaatcaaatgcgaaattacactaaaaaaaa-gatg |
3563204 |
T |
|
| Q |
216 |
aaatgaagtttctgagtgcattgaacataaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563205 |
aaatgaagtttctgagtgcattgaacataaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcatt |
3563304 |
T |
|
| Q |
316 |
aatctccaagcaagcagagacttggacggaggaatatccttgcaccaaattgtagaggcccaatgcttctttgttcctggagttttcttgaaagcatatg |
415 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563305 |
aatctccaagaaagcagagacttggacggaggaatatccttgcaccaaattgtagaggcccaatgcttctttgttcctggagttttcttgaaagcatatg |
3563404 |
T |
|
| Q |
416 |
catcgttgagggttaactgaccattttctgtatgcttccatattacttgatcctttaaatcttcaactggaatgattactttaagcacaagtgatctcaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563405 |
catcgttgagggttaactgaccattttctgtatgcttccatattacttgatcctttaaatcttcaactggaatgattactttaagcacaagtgatctcaa |
3563504 |
T |
|
| Q |
516 |
ctggggatataaagctagtagatcaagaggaatattccaaaggctgcctgcaatataatcaccaacaagctgaggtagattgtttgtcatgtttatgttc |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
3563505 |
ctggggatataaagctagtagatcaagaggaatattccagtggctgcctgcaatataatcatcaacaagctgaggtagattgtttgtcatgtttgtgttc |
3563604 |
T |
|
| Q |
616 |
atatttaaaactgatactagagggtctccacaccaactgtcttgccaaaaattgattgaattcccatttccaatgagccaagttgagtgttctttgatcg |
715 |
Q |
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| T |
3563605 |
atatttaaaactgatactagagggtctccacaccaactgtcttgccaaaaattgattgaattcccatttccaatgagccaagttgagtgttctttgatcg |
3563704 |
T |
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| Q |
716 |
ccaagaattctgctttaatgctggacc |
742 |
Q |
| |
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| T |
3563705 |
ccaagaattctgctttaatgttggacc |
3563731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 9749488 - 9749614
Alignment:
| Q |
251 |
acatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaat |
350 |
Q |
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| T |
9749488 |
acatagatggaatgttgcaacccatttccatgagtttttcatcgatgagtactttatcatgcattaatctccaagctagaagagatttttatgggggtat |
9749587 |
T |
|
| Q |
351 |
atccttgcaccaaattgtagaggccca |
377 |
Q |
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|||||| ||||||||||| || ||||| |
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| T |
9749588 |
atccttacaccaaattgttgatgccca |
9749614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 12053842 - 12053963
Alignment:
| Q |
244 |
aaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacg |
343 |
Q |
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||||||||||| ||||| ||||| || || |||| | | ||||| |||||| | || | |||||||| | |||||||||||||| |||||| || || | |
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| T |
12053842 |
aaagagcacattgatgggagattgcagcctctttgcttcagcttatcatcaataggcattttgtcatgaagtaatctccaagcaatcagagatttagaag |
12053941 |
T |
|
| Q |
344 |
gaggaatatccttgcaccaaat |
365 |
Q |
| |
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|||| ||||| |||||||||| |
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| T |
12053942 |
gaggtatatcaatgcaccaaat |
12053963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 250 - 386
Target Start/End: Original strand, 14169886 - 14170022
Alignment:
| Q |
250 |
cacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaa |
349 |
Q |
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||||| |||||||| || ||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||||| |
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| T |
14169886 |
cacattgatggaaggttgcatcctctttccatgagtttttcatctgttggaactttgtcatgcattaatctccaagctagcagagatttgaatggaggaa |
14169985 |
T |
|
| Q |
350 |
tatccttgcaccaaattgtagaggcccaatgcttctt |
386 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
14169986 |
tatccttgcaccaaattgtagaggcccaatgtttctt |
14170022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 30254104 - 30254141
Alignment:
| Q |
286 |
ttttcatcagtgggaaccttgtcatgcattaatctcca |
323 |
Q |
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||||||||||| ||||||||||||||||| |||||||| |
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| T |
30254104 |
ttttcatcagttggaaccttgtcatgcatcaatctcca |
30254141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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