View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14466_high_2 (Length: 461)

Name: NF14466_high_2
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14466_high_2
NF14466_high_2
[»] chr1 (10 HSPs)
chr1 (18-447)||(9300713-9301142)
chr1 (333-419)||(38737286-38737372)
chr1 (366-443)||(41834800-41834877)
chr1 (329-414)||(39668848-39668934)
chr1 (365-426)||(32815207-32815268)
chr1 (369-453)||(35365567-35365651)
chr1 (352-415)||(42483270-42483333)
chr1 (373-410)||(2574925-2574962)
chr1 (329-390)||(13028992-13029053)
chr1 (352-392)||(40043330-40043370)
[»] chr2 (9 HSPs)
chr2 (329-443)||(3636403-3636517)
chr2 (304-426)||(14812250-14812373)
chr2 (352-431)||(18375489-18375568)
chr2 (328-396)||(28538027-28538095)
chr2 (346-427)||(37528691-37528773)
chr2 (329-414)||(1758460-1758545)
chr2 (326-410)||(879506-879590)
chr2 (325-448)||(28489121-28489244)
chr2 (304-426)||(37331805-37331928)
[»] scaffold0065 (1 HSPs)
scaffold0065 (329-443)||(49061-49178)
[»] chr4 (14 HSPs)
chr4 (333-430)||(50783548-50783645)
chr4 (351-453)||(43361811-43361913)
chr4 (329-443)||(35798985-35799101)
chr4 (352-436)||(4066403-4066487)
chr4 (370-420)||(16530221-16530271)
chr4 (329-403)||(31377597-31377670)
chr4 (329-403)||(34461364-34461438)
chr4 (379-436)||(2914764-2914821)
chr4 (329-426)||(45219017-45219114)
chr4 (378-426)||(4512822-4512870)
chr4 (328-428)||(43154558-43154658)
chr4 (371-422)||(39985076-39985127)
chr4 (329-403)||(11899959-11900033)
chr4 (388-432)||(21111778-21111822)
[»] chr3 (10 HSPs)
chr3 (329-436)||(35044076-35044183)
chr3 (328-443)||(42225984-42226098)
chr3 (328-431)||(54259933-54260036)
chr3 (381-443)||(46370882-46370944)
chr3 (328-421)||(50888867-50888960)
chr3 (370-413)||(3432475-3432518)
chr3 (328-398)||(34908559-34908628)
chr3 (352-413)||(32208106-32208167)
chr3 (373-448)||(7753111-7753186)
chr3 (362-410)||(16144125-16144173)
[»] scaffold0172 (2 HSPs)
scaffold0172 (356-426)||(19453-19523)
scaffold0172 (327-411)||(28502-28586)
[»] chr7 (6 HSPs)
chr7 (329-437)||(23803360-23803468)
chr7 (304-420)||(37134112-37134228)
chr7 (304-381)||(1397886-1397964)
chr7 (370-428)||(7723147-7723205)
chr7 (367-403)||(7712527-7712563)
chr7 (326-426)||(30965736-30965836)
[»] chr6 (3 HSPs)
chr6 (329-420)||(25211655-25211746)
chr6 (363-426)||(33193800-33193863)
chr6 (325-373)||(25181482-25181530)
[»] chr8 (5 HSPs)
chr8 (330-448)||(42409070-42409188)
chr8 (352-449)||(2072192-2072289)
chr8 (301-426)||(10328688-10328815)
chr8 (345-410)||(34505206-34505271)
chr8 (329-403)||(13177756-13177830)
[»] chr5 (6 HSPs)
chr5 (384-447)||(28995855-28995918)
chr5 (384-447)||(28992577-28992640)
chr5 (303-388)||(19893338-19893424)
chr5 (370-453)||(10803398-10803481)
chr5 (304-449)||(8713775-8713920)
chr5 (354-387)||(5827148-5827181)
[»] scaffold0129 (2 HSPs)
scaffold0129 (378-449)||(25852-25923)
scaffold0129 (378-420)||(27247-27289)


Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 9300713 - 9301142
Alignment:
Q  18 aaaagttccacgcaatccttttgggccatcgacttccaccaatacaactgctagtatcgtttcaaaacctatgagtttggagctggaagtgattaaagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300713 aaaagttccacgcaatccttttgggccatcgacttccaccaatacaactgctagtatcgtttcaaaacctatgagtttggagctggaagtgattaaagag 9300812  T
Q  118 ttagattagatgaaaataattattagatatataatattgtcaatggtttattactttgaaacaaactacttacttttgatttgtaaatttaaggagatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300813 ttagattagatgaaaataattattagatatataatattgtcaatggtttattactttgaaacaaactacttacttttgatttgtaaatttaaggagatat 9300912  T
Q  218 atgttaaatttgaatgtcaaatgaaaaatttagtggacattgatgtgtttgtcattctcaatgcaagagcttaatatttactctgaaaaatgcaaacaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300913 atgttaaatttgaatgtcaaatgaaaaatttagtggacattgatgtgtttgtcattctcaatgcaagagcttaatatttactctgaaaaatgcaaacaaa 9301012  T
Q  318 tgctcttaggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9301013 tgctcttaggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggta 9301112  T
Q  418 aaatttcttataatggattctttaaataat 447  Q
    ||||||||||||||||||||||||||||||    
T  9301113 aaatttcttataatggattctttaaataat 9301142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 419
Target Start/End: Original strand, 38737286 - 38737372
Alignment:
Q  333 tttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaa 419  Q
    ||||||||| | ||||| ||||||||| ||||||||  |||||||||| ||||||||||| ||||||||||||||||| ||| ||||    
T  38737286 tttaagcaactgaaagtaataacttttgtataaaaacatgtgtaattactacttttacatgtgtttgacttatgttttcaagataaa 38737372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 41834800 - 41834877
Alignment:
Q  366 aaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaa 443  Q
    |||||||||||||||||||||||| || |||||||||| | |||||||| || |||| ||||||||| |||| |||||    
T  41834800 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 41834877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 39668848 - 39668934
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaa-aattgtgtaattattacttttacatttgtttgacttatgtttttaag 414  Q
    |||||| |||||| ||||| | ||||||||| ||||||| |||||||||||||||| ||||| || | |||||||||| ||||||||    
T  39668848 attgttcaagcaactaaaactaataacttttgtataaaaaaattgtgtaattattatttttatatgtatttgacttatatttttaag 39668934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 32815207 - 32815268
Alignment:
Q  365 aaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctt 426  Q
    ||||||| |||||||||||||||||||| |||||||||| | |||||||| |||||| ||||    
T  32815207 aaaaattatgtaattattacttttacatatgtttgacttgtatttttaagataaaatatctt 32815268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 453
Target Start/End: Original strand, 35365567 - 35365651
Alignment:
Q  369 attgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatattctt 453  Q
    ||||||||||||| || ||||||| |||||||||||| |||| ||| || |||||||||| |||||||  ||||| ||| |||||    
T  35365567 attgtgtaattatgacatttacatatgtttgacttatattttcaagatataatttcttattatggatttcttaaacaattttctt 35365651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 42483333 - 42483270
Alignment:
Q  352 taacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaagg 415  Q
    ||||||||||||| |||||||  || ||||||||||||||| ||||| |||||| |||||||||    
T  42483333 taacttttatatagaaaattgaatatttattacttttacatatgtttaacttatatttttaagg 42483270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 2574962 - 2574925
Alignment:
Q  373 tgtaattattacttttacatttgtttgacttatgtttt 410  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  2574962 tgtaattattacatttacatgtgtttgacttatgtttt 2574925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 13028992 - 13029053
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttac 390  Q
    |||||||||| | ||||||||  ||||||||| || |||||||||||| |||| ||||||||    
T  13028992 attgtttaagtatttaaaagtagtaacttttacattaaaaattgtgtagttataacttttac 13029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 40043370 - 40043330
Alignment:
Q  352 taacttttatataaaaaattgtgtaattattacttttacat 392  Q
    ||||||||||||| |||||||||||||||| | ||||||||    
T  40043370 taacttttatatagaaaattgtgtaattatgatttttacat 40043330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 329 - 443
Target Start/End: Complemental strand, 3636517 - 3636403
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttat 428  Q
    ||||||||||||| |||||||  |||||||||  || ||| || ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||    
T  3636517 attgtttaagcaactaaaagtagtaacttttacctagaaacttctgtaattattacttttacatttgtttgacttatgtgttcaagataaaatttcttat 3636418  T
Q  429 aatggattctttaaa 443  Q
    ||| ||||| |||||    
T  3636417 aatagattccttaaa 3636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 14812250 - 14812373
Alignment:
Q  304 aaaatgcaaacaaatgctctta-ggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgact 402  Q
    ||||||| ||||| ||| |||| || |||||||||||| | ||||||  ||||||||| ||  |||||||||||||||| |||||||||| |||||||||    
T  14812250 aaaatgctaacaagtgcccttacggcattgtttaagcattcaaaagtattaacttttacattgaaaattgtgtaattataacttttacatatgtttgact 14812349  T
Q  403 tatgtttttaaggtaaaatttctt 426  Q
    | | |||| ||| |||||||||||    
T  14812350 tgtattttcaagataaaatttctt 14812373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 18375489 - 18375568
Alignment:
Q  352 taacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataat 431  Q
    |||||||||||||||||||| |||||||||||||||||  | || ||||||||| |||||||| ||||  ||||||||||    
T  18375489 taacttttatataaaaaattatgtaattattacttttatgtatgcttgacttatatttttaagataaatattcttataat 18375568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 28538095 - 28538027
Alignment:
Q  328 tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgt 396  Q
    ||||||||||||| |||||||  ||||||||||||  ||||||| ||||||||| ||||||||||||||    
T  28538095 tattgtttaagcatttaaaaggaataacttttataataaaaattatgtaattatgacttttacatttgt 28538027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 37528773 - 37528691
Alignment:
Q  346 aagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttat-gtttttaaggtaaaatttctta 427  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||| | ||| || |||  |||||||| ||||||||||||    
T  37528773 aagtgataatttttatataaaaaattatgtaattattccttttacatatatttaacctataatttttaagataaaatttctta 37528691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 1758460 - 1758545
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaag 414  Q
    ||||||||||||  |||||||  ||||||||  |||||||||||||||  ||| |||| ||||| |||||||||||| ||||||||    
T  1758460 attgtttaagcatctaaaagtagtaacttttgcataaaaaattgtgtagatatgacttctacatgtgtttgacttatatttttaag 1758545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 879590 - 879506
Alignment:
Q  326 ggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttt 410  Q
    ||||||||||||||||| || | |  ||||||||  ||| |||  ||||| |||||||||||| ||| |||||||||||||||||    
T  879590 ggtattgtttaagcaatcaataatagtaacttttgcatagaaatatgtgtgattattactttttcatatgtttgacttatgtttt 879506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 448
Target Start/End: Original strand, 28489121 - 28489244
Alignment:
Q  325 aggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttc 424  Q
    ||||||||||||| |||| || ||| |||| |||||| ||||||||| ||||||||| || ||||| | ||||| |||| | |||| ||  |||| ||||    
T  28489121 aggtattgtttaaacaatcaatagtaataatttttatttaaaaaattatgtaattatgacgtttacttatgtttaacttgtattttcaaaataaagtttc 28489220  T
Q  425 ttataatggattctttaaataata 448  Q
    || |   |||||||||||| ||||    
T  28489221 tttttgaggattctttaaacaata 28489244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 37331928 - 37331805
Alignment:
Q  304 aaaatgcaaacaaatgctcttagg-tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgact 402  Q
    ||||||| |||||||| | ||| | |||||||||||||  |||||||  ||| |||| |||  | |||||||||||||| | ||| | || | |||||||    
T  37331928 aaaatgctaacaaatgttattaagatattgtttaagcatctaaaagtagtaatttttgtattgacaattgtgtaattatgattttaatatatatttgact 37331829  T
Q  403 tatgtttttaaggtaaaatttctt 426  Q
    ||| |||||||| |||||||||||    
T  37331828 tatatttttaagataaaatttctt 37331805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 329 - 443
Target Start/End: Original strand, 49061 - 49178
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaatta---ttacttttacatttgtttgacttatgtttttaaggtaaaatttct 425  Q
    ||||||||||||| ||||| |||||| ||||  ||| ||| |||||||||||   |||||||||||| | ||||||||||||||||||| ||| ||||||    
T  49061 attgtttaagcaactaaaaatgataatttttgcatagaaacttgtgtaattattattacttttacatgtatttgacttatgtttttaagataacatttct 49160  T
Q  426 tataatggattctttaaa 443  Q
    |||||||||||| |||||    
T  49161 tataatggattccttaaa 49178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 50783548 - 50783645
Alignment:
Q  333 tttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataa 430  Q
    ||||| ||| |||||||  ||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||    
T  50783548 tttaaacaactaaaagtagtaacttttatatagaaacttgtgtaattattacttttacatgtgtttgactaatgttttcaagataaaatttcatataa 50783645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 453
Target Start/End: Original strand, 43361811 - 43361913
Alignment:
Q  351 ataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatatt 450  Q
    |||| ||||| ||| ||| |||||||| ||||||||||| |  ||||||||||||||||||||| |||| |||||| |||||||||| ||||| ||| ||    
T  43361811 ataatttttacatagaaatttgtgtaagtattacttttaaacgtgtttgacttatgtttttaagataaagtttcttttaatggattccttaaacaatgtt 43361910  T
Q  451 ctt 453  Q
    |||    
T  43361911 ctt 43361913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 443
Target Start/End: Complemental strand, 35799101 - 35798985
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattactttt--acatttgtttgacttatgtttttaaggtaaaatttctt 426  Q
    |||||||||| ||  ||||||  ||| |||| |||| ||| || ||||||||||||||||  |||| |||||||| ||| |||| ||  |||||||||||    
T  35799101 attgtttaagtaaccaaaagtagtaatttttgtatagaaacttttgtaattattacttttttacatgtgtttgacatatattttcaaaataaaatttctt 35799002  T
Q  427 ataatggattctttaaa 443  Q
    |||||||||||||||||    
T  35799001 ataatggattctttaaa 35798985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 4066487 - 4066403
Alignment:
Q  352 taacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggatt 436  Q
    ||||||||  ||| ||| |||| ||||||||| ||| || | ||||||||||||||||| ||| || ||||||||||||||||||    
T  4066487 taacttttgcatagaaacttgtataattattagtttcacgtgtgtttgacttatgttttcaagatataatttcttataatggatt 4066403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 16530271 - 16530221
Alignment:
Q  370 ttgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaa 420  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||| |||||    
T  16530271 ttgtgtaattattacttttacatatgtttgacttatattttcaagataaaa 16530221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 31377670 - 31377597
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgactt 403  Q
    |||||||||||||||  ||||  ||||||||| ||| |||||||||||||||| || ||||||| ||||||||||    
T  31377670 attgtttaagcaatttgaagtagtaacttttacatagaaaattgtgtaattatgac-tttacatgtgtttgactt 31377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 34461364 - 34461438
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgactt 403  Q
    |||||||||  ||||||||||| ||| |||| ||||||| ||| |||||||| ||| |||| |||||||||||||    
T  34461364 attgtttaaataattaaaagtggtaatttttgtataaaagattatgtaattaatacatttatatttgtttgactt 34461438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 2914821 - 2914764
Alignment:
Q  379 tattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggatt 436  Q
    |||||||||||||| ||||||||||||| ||| ||| ||||||| || ||||||||||    
T  2914821 tattacttttacatgtgtttgacttatgctttcaagataaaattactaataatggatt 2914764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 45219114 - 45219017
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctt 426  Q
    ||||||||||||  |||||||  ||| ||||||||   |||||||||| |||| |||||||||| ||||| |||||| |||| |||  ||||||||||    
T  45219114 attgtttaagcatctaaaagtagtaatttttatatttgaaattgtgtacttatgacttttacatatgttttacttatattttaaagacaaaatttctt 45219017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 4512870 - 4512822
Alignment:
Q  378 ttattacttttacatttgtttgacttatgtttttaaggtaaaatttctt 426  Q
    |||| |||||||||| |||||||||||||||||||||  ||||||||||    
T  4512870 ttataacttttacatgtgtttgacttatgtttttaagacaaaatttctt 4512822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 428
Target Start/End: Original strand, 43154558 - 43154658
Alignment:
Q  328 tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctta 427  Q
    ||||||||||  | |||||||| |||| |||||||| | ||||||| || ||||||||||||||| ||| |||||| |  ||||||  |||| |||||||    
T  43154558 tattgtttaaatatttaaaagtaataatttttatattagaaattgtatatttattacttttacatgtgtctgacttctacttttaaaataaagtttctta 43154657  T
Q  428 t 428  Q
    |    
T  43154658 t 43154658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 39985076 - 39985127
Alignment:
Q  371 tgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatt 422  Q
    |||||||||||||||||||||| | ||||| ||||| ||||||| |||||||    
T  39985076 tgtgtaattattacttttacatgtatttgatttatgcttttaagataaaatt 39985127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 11899959 - 11900033
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgactt 403  Q
    ||||||||||   ||||||||  |||| |||||||||||||||||||| |||| |||||  ||| ||||||||||    
T  11899959 attgtttaagtctttaaaagtagtaacatttatataaaaaattgtgtagttatgactttcgcatgtgtttgactt 11900033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 21111822 - 21111778
Alignment:
Q  388 tacatttgtttgacttatgtttttaaggtaaaatttcttataatg 432  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||    
T  21111822 tacatgtgtttgacttatattttcaagataaaatttcttataatg 21111778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 436
Target Start/End: Original strand, 35044076 - 35044183
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttat 428  Q
    ||||||||||||| |||||||  | ||||||  ||| |||  ||||||||||||||||| |||| ||||||||||| ||||| ||| |||||||||||||    
T  35044076 attgtttaagcaactaaaagtagtcacttttgcatagaaacatgtgtaattattactttcacatgtgtttgacttaggttttcaagataaaatttcttat 35044175  T
Q  429 aatggatt 436  Q
    ||||||||    
T  35044176 aatggatt 35044183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 443
Target Start/End: Complemental strand, 42226098 - 42225984
Alignment:
Q  328 tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctta 427  Q
    ||||| |||||||| |||||||  |||||||| |||| ||| ||||||||| |||||||||| || |||| || ||||||||| ||| ||||||||||||    
T  42226098 tattgcttaagcaactaaaagtattaacttttgtatacaaacttgtgtaat-attacttttaaatatgttagatttatgttttcaagataaaatttctta 42226000  T
Q  428 taatggattctttaaa 443  Q
    |||| ||||| |||||    
T  42225999 taatagattccttaaa 42225984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 54259933 - 54260036
Alignment:
Q  328 tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctta 427  Q
    |||||||||| ||| |||||||||||| ||||   | |||| |  ||||||||||||||||||| | ||||||||||| |||| ||| |||||||| |||    
T  54259933 tattgtttaaacaactaaaagtgataatttttgcgtgaaaagtaatgtaattattacttttacactcgtttgacttatattttcaagataaaatttttta 54260032  T
Q  428 taat 431  Q
    ||||    
T  54260033 taat 54260036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 46370882 - 46370944
Alignment:
Q  381 ttacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaa 443  Q
    |||| ||||||||||||||| ||||||||| |||||||||| | ||||||| |||||||||||    
T  46370882 ttacctttacatttgtttgatttatgttttcaaggtaaaatgttttataatagattctttaaa 46370944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 50888960 - 50888867
Alignment:
Q  328 tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaat 421  Q
    |||| |||||||| ||||||   |||| |||||||| |||||||||||| |||| |||||||||| |||||||||| | ||| |||| ||||||    
T  50888960 tattttttaagcatttaaaaacaataatttttatattaaaaattgtgtagttataacttttacatgtgtttgacttgtatttctaagataaaat 50888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 3432475 - 3432518
Alignment:
Q  370 ttgtgtaattattacttttacatttgtttgacttatgtttttaa 413  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  3432475 ttgtgtaattattacttttatatttgtttgatttatgtttttaa 3432518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 34908559 - 34908628
Alignment:
Q  328 tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgttt 398  Q
    ||||||||||||||| ||| ||  |||  |||||||||||||||||||| ||||||||||||||| |||||    
T  34908559 tattgtttaagcaatcaaa-gtagtaatatttatataaaaaattgtgtacttattacttttacatgtgttt 34908628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 32208167 - 32208106
Alignment:
Q  352 taacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaa 413  Q
    ||||||||| ||| |||  ||||| |||||||||||| ||| ||||||||||||||||||||    
T  32208167 taacttttacatagaaatatgtgtgattattactttttcatatgtttgacttatgtttttaa 32208106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 448
Target Start/End: Original strand, 7753111 - 7753186
Alignment:
Q  373 tgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataata 448  Q
    ||||||||||||||||| || ||||||| ||||||||| ||| ||||| || || || ||||||| ||||| ||||    
T  7753111 tgtaattattacttttatatgtgtttgatttatgttttcaagataaaactttttttattggattccttaaacaata 7753186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 16144173 - 16144125
Alignment:
Q  362 ataaaaaattgtgtaattattacttttacatttgtttgacttatgtttt 410  Q
    ||||||| |||||||||||||| |||||| | ||||||| |||||||||    
T  16144173 ataaaaatttgtgtaattattatttttacttgtgtttgatttatgtttt 16144125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 19523 - 19453
Alignment:
Q  356 ttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctt 426  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  19523 ttttgtataaaaacttgtgtaattattacttttacatgtgtttgacttatgttttcaagataaaatttctt 19453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 28586 - 28502
Alignment:
Q  327 gtattgtttaagcaattaaaagtgataacttttatata-aaaaattgtgtaattattacttttacatttgtttgacttatgttttt 411  Q
    |||| |||||| ||||||||| |||| | ||||| ||| |||||||| |||||||| | |||||||| |||||||||||| |||||    
T  28586 gtatagtttaaacaattaaaaatgatca-ttttacatagaaaaattgcgtaattataatttttacatgtgtttgacttatattttt 28502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 437
Target Start/End: Original strand, 23803360 - 23803468
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttat 428  Q
    |||||||||||||  |||| | |||  |||| |||||||| || | ||||||||||||||| || ||||||||||||  ||||||| |||||||||||||    
T  23803360 attgtttaagcaacaaaaaataatattttttgtataaaaatttatataattattacttttaaatgtgtttgacttataattttaagataaaatttcttat 23803459  T
Q  429 aatggattc 437  Q
    ||| |||||    
T  23803460 aatagattc 23803468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 420
Target Start/End: Complemental strand, 37134228 - 37134112
Alignment:
Q  304 aaaatgcaaacaaatgctcttaggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgactt 403  Q
    ||||||| ||||| || |||  |||||||||||||||| ||||| |  ||||||| | ||||||| ||||||||||||||||||||  | | ||| ||||    
T  37134228 aaaatgctaacaagtgttctccggtattgtttaagcaactaaaaatagtaactttcacataaaaatttgtgtaattattacttttatttgtttttaactt 37134129  T
Q  404 atgtttttaaggtaaaa 420  Q
    ||||||||||| |||||    
T  37134128 atgtttttaagataaaa 37134112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 1397964 - 1397886
Alignment:
Q  304 aaaatgcaaacaaatgctcttaggt-attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattat 381  Q
    ||||||| |||||||| | |||||  |||||||||||| ||||||||  ||| |||||||| |||||||||||| ||||    
T  1397964 aaaatgctaacaaatgttattaggagattgtttaagcatttaaaagtagtaatttttatattaaaaattgtgtagttat 1397886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 7723147 - 7723205
Alignment:
Q  370 ttgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttat 428  Q
    |||| |||||||||  ||| | |||||||||||||| |||||||| |||||||||||||    
T  7723147 ttgtataattattaactttgcttttgtttgacttatatttttaagataaaatttcttat 7723205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 7712563 - 7712527
Alignment:
Q  367 aaattgtgtaattattacttttacatttgtttgactt 403  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  7712563 aaattgtgtaattatcacttttatatttgtttgactt 7712527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 426
Target Start/End: Original strand, 30965736 - 30965836
Alignment:
Q  326 ggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttct 425  Q
    |||||||||||| ||   ||||||  || ||||||||| |||||||||||| |||| ||||  || | ||||||| |||| |||| ||| ||||||||||    
T  30965736 ggtattgtttaatcatccaaaagtagtatcttttatattaaaaattgtgtatttatgacttcaacgtgtgtttgatttatattttcaagataaaatttct 30965835  T
Q  426 t 426  Q
    |    
T  30965836 t 30965836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 25211655 - 25211746
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaa 420  Q
    ||||||||| |||||||||||  ||| ||| ||||||||| |||||||||||||| |||||||| ||||  |||||| |||||||| |||||    
T  25211655 attgtttaaacaattaaaagtagtaattttaatataaaaatttgtgtaattattatttttacatgtgttcaacttatatttttaagataaaa 25211746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 33193863 - 33193800
Alignment:
Q  363 taaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttctt 426  Q
    |||||||||||||| ||||||||||||||  ||||  |||||| |||||||| |||||||||||    
T  33193863 taaaaaattgtgtatttattacttttacaagtgttatacttatatttttaagataaaatttctt 33193800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 25181530 - 25181482
Alignment:
Q  325 aggtattgtttaagcaattaaaagtgataacttttatataaaaaattgt 373  Q
    ||||||||||||||||||||||  |||||||||||  ||| ||||||||    
T  25181530 aggtattgtttaagcaattaaatatgataacttttgcatacaaaattgt 25181482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 448
Target Start/End: Complemental strand, 42409188 - 42409070
Alignment:
Q  330 ttgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttata 429  Q
    |||||||||||| |||||||  ||| ||||  ||| ||| || | |||||||||||||||||| | ||||||||||||||| ||| |||| ||| || ||    
T  42409188 ttgtttaagcaactaaaagtagtaatttttgcatagaaacttatataattattacttttacatgtatttgacttatgttttcaagataaagtttttttta 42409089  T
Q  430 atggattctttaaataata 448  Q
    |||||||| ||||| ||||    
T  42409088 atggattccttaaacaata 42409070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 2072192 - 2072289
Alignment:
Q  352 taacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatat 449  Q
    |||||||||||| |||||||||||| |||| ||||||| || ||||||| || | |||| |||  |||||||||| | | | ||||||||||||||||    
T  2072192 taacttttatattaaaaattgtgtagttataacttttatatgtgtttgatttgtattttcaagagaaaatttctttttaagcattctttaaataatat 2072289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 10328815 - 10328688
Alignment:
Q  301 tgaaaaatgcaaacaaatgctcttaggt-attgtttaagcaattaaaagtgat-aacttttatataaaaaattgtgtaattattacttttacatttgttt 398  Q
    |||||||||| ||||||||| |||| |  |||||||||||| | |||||| |  |||||||| ||||||||||||| |||| | ||||| | || |||||    
T  10328815 tgaaaaatgctaacaaatgcgcttatgacattgtttaagcattcaaaagttaacaacttttacataaaaaattgtgcaattgtgactttaagatatgttt 10328716  T
Q  399 gacttatgtttttaaggtaaaatttctt 426  Q
    ||||||| ||| ||||  ||||||||||    
T  10328715 gacttatatttgtaagacaaaatttctt 10328688  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 34505271 - 34505206
Alignment:
Q  345 aaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgacttatgtttt 410  Q
    ||||| |||||||| ||||  |||||||| ||||||| |||||||||| |||||||||||| ||||    
T  34505271 aaagtaataactttgatattgaaaattgtataattatgacttttacatgtgtttgacttatttttt 34505206  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 13177756 - 13177830
Alignment:
Q  329 attgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgactt 403  Q
    |||||||||||| | ||||||  ||||||||||||   ||||| |||| |||| |||||||||| ||||||||||    
T  13177756 attgtttaagcattcaaaagtagtaacttttatattggaaattatgtagttatgacttttacatgtgtttgactt 13177830  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 28995855 - 28995918
Alignment:
Q  384 cttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataat 447  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| |||||||||  |||||||||    
T  28995855 cttttacatgtgtttgccttatgtttttaagataaaatttcttttaatggatttcttaaataat 28995918  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 28992577 - 28992640
Alignment:
Q  384 cttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataat 447  Q
    ||||||||  |||||| |||||||||||||| ||||||||||| |||||||||  |||||||||    
T  28992577 cttttacaagtgtttgccttatgtttttaagataaaatttcttttaatggatttcttaaataat 28992640  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 19893338 - 19893424
Alignment:
Q  303 aaaaatgcaaacaaatgctcttaggta-ttgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattactttt 388  Q
    |||||||| |||||||||  ||||| | |||||||| |||| |||| |||||| ||||| ||||||| |||||||||||||| ||||    
T  19893338 aaaaatgctaacaaatgccgttagggaattgtttaaacaataaaaaatgataaattttaaataaaaagttgtgtaattattattttt 19893424  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 10803481 - 10803398
Alignment:
Q  370 ttgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatattctt 453  Q
    ||||||||||||||||| || |  ||||||| ||||||||| ||| |||||||||| |||||  |||  ||||| |||||||||    
T  10803481 ttgtgtaattattacttatatacatgtttgatttatgttttcaagataaaatttctcataataaatttcttaaacaatattctt 10803398  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 449
Target Start/End: Complemental strand, 8713920 - 8713775
Alignment:
Q  304 aaaatgcaaacaaatgctcttagg-tattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttttacatttgtttgact 402  Q
    ||||||| ||||| |||||| ||| ||||||||||||| |||||||| | ||||||| ||| | |||||||| | |||| || || | || |||||||||    
T  8713920 aaaatgctaacaagtgctctaagggtattgtttaagcatttaaaagtaacaacttttgtattagaaattgtgcagttatgac-ttaaaatatgtttgact 8713822  T
Q  403 tatgtttttaaggtaaaatttcttataatggattctttaaataatat 449  Q
    | | |||| |||  ||||||| || |||||||||  ||||| |||||    
T  8713821 tgtattttcaagacaaaattttttttaatggatttcttaaacaatat 8713775  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 5827181 - 5827148
Alignment:
Q  354 acttttatataaaaaattgtgtaattattacttt 387  Q
    |||||||||||||||||||||||||||| |||||    
T  5827181 acttttatataaaaaattgtgtaattatgacttt 5827148  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 449
Target Start/End: Original strand, 25852 - 25923
Alignment:
Q  378 ttattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatat 449  Q
    |||||| ||||| |||||||||||||||||||||||| |||||    ||||||||||||| ||||| |||||    
T  25852 ttattatttttatatttgtttgacttatgtttttaagataaaaaaaattataatggattccttaaacaatat 25923  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 27247 - 27289
Alignment:
Q  378 ttattacttttacatttgtttgacttatgtttttaaggtaaaa 420  Q
    |||||||||||| |||| ||||||||||||||| |||||||||    
T  27247 ttattacttttatatttatttgacttatgttttcaaggtaaaa 27289  T

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