View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_high_3 (Length: 438)
Name: NF14466_high_3
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 76 - 432
Target Start/End: Complemental strand, 43380718 - 43380373
Alignment:
| Q |
76 |
ttgtgttaaaaaagccacatactaggagaatttcaaatgatctttaaaggcagaaatgggtacccttcaaattcttgttcgaaaatggccattgtttttg |
175 |
Q |
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| T |
43380718 |
ttgtgataaaaaagacacatactagaagaatttcaaatgatatttaaaggcagaaatgggtacccttcaaattcttgttcgataatggccattgtttttg |
43380619 |
T |
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| Q |
176 |
caagtctactggcaacatccttaacactttcccctccttctggcccaaaaagaggatctttctcatctatttcccaaatatgatcatactgtttgttgat |
275 |
Q |
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| T |
43380618 |
caagtctactggcaacatccttaacactttcccctccttctggcccaacaagaggatctttctcatctatttcccaaatatgatcatac----tattgat |
43380523 |
T |
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| Q |
276 |
nnnnnnntgaaaagagaaaatgagtttaacaaactacttttcatttgttggaaactgattctctgtcttaaaagtcatgacacaaattgagccatttatg |
375 |
Q |
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| T |
43380522 |
aaaaaaatgaaaagagaaaatgagtttaacaaac------tcatgactt-aaaactgattctctgtcttaaaactcatgacacaaattgagccatttatg |
43380430 |
T |
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| Q |
376 |
aatgagttaccttatcatgagataaaagctcaaaggaaggaccaaagtagcgctctc |
432 |
Q |
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| T |
43380429 |
aatgagttaccttatcatgagataaaagctcaaaggaaggaccaaagtagcgctctc |
43380373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43380842 - 43380764
Alignment:
| Q |
1 |
tactagatcacaagccaaaattaaatgttcaccatttgaaattttgaaaagtatttgcatgttactgtgaatcttttgt |
79 |
Q |
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|||||||||||||| |||||| |||| || || | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43380842 |
tactagatcacaagacaaaataaaatattgactaactgaaattttgaaaagtatttgcatgttacagtgaatcttttgt |
43380764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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