View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_high_5 (Length: 381)
Name: NF14466_high_5
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 31494566 - 31494917
Alignment:
| Q |
13 |
aatataaaaaagtaatcacatagtattggatgattgataccatgactttctctaagaattgaagttcgatttattgagcaatctattatagataaagtct |
112 |
Q |
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| T |
31494566 |
aatataaaaaagtaatcacatagtattggatgattgataccatgactttctctaagaattgaagttcgatttatagagcaatctattatagataaagtct |
31494665 |
T |
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| Q |
113 |
aattacataaaaagttagaatttctccaatgtataatgttatattcctctttagatttcttaaaaagtactcttaatacttgttagcattttccaaaaac |
212 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31494666 |
aattccataaaaagttagaatttctccaatttataatgttatattcctctttagatttcttaaaaagtacttttaatacttgttagcattttccaaaaac |
31494765 |
T |
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| Q |
213 |
taatcctatgggatgcacaaactcaaacatcaaattgctttatggctaaactttccatcaaaatatcataattaggcaatgnnnnnnnnnnnngatcaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31494766 |
aaatcctatgggatgcacaaactcaaacatcaaattgctttatggctaaactttccatcaaaatatcataattaggcaatgttttttctttttgatcaac |
31494865 |
T |
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| Q |
313 |
ttcaccaagcaacctaaccatattcattccttctctttcagccctcatttgg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31494866 |
ttcaccaagcaacctaaccatattcattccttctctttcagccctcatttgg |
31494917 |
T |
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