View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14466_high_9 (Length: 295)

Name: NF14466_high_9
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14466_high_9
NF14466_high_9
[»] chr5 (8 HSPs)
chr5 (23-285)||(6020293-6020555)
chr5 (23-268)||(31862164-31862410)
chr5 (37-199)||(10487243-10487405)
chr5 (148-199)||(587157-587208)
chr5 (153-199)||(6264651-6264697)
chr5 (36-196)||(34480600-34480760)
chr5 (154-196)||(32917961-32918003)
chr5 (162-199)||(15500108-15500145)
[»] chr7 (7 HSPs)
chr7 (23-263)||(12379048-12379289)
chr7 (155-281)||(968041-968169)
chr7 (37-199)||(15654042-15654204)
chr7 (37-199)||(46623345-46623507)
chr7 (139-196)||(3104547-3104604)
chr7 (218-249)||(692120-692151)
chr7 (109-191)||(21277460-21277542)
[»] chr8 (5 HSPs)
chr8 (23-285)||(31216814-31217078)
chr8 (37-191)||(7452001-7452155)
chr8 (148-268)||(39483188-39483309)
chr8 (154-245)||(412819-412911)
chr8 (36-121)||(16421345-16421430)
[»] chr3 (9 HSPs)
chr3 (37-199)||(30167682-30167844)
chr3 (148-249)||(24227405-24227507)
chr3 (37-199)||(49732270-49732432)
chr3 (148-268)||(28675377-28675498)
chr3 (148-196)||(9378741-9378789)
chr3 (153-191)||(25873565-25873603)
chr3 (36-104)||(7146777-7146845)
chr3 (217-249)||(15484301-15484333)
chr3 (217-249)||(36708475-36708507)
[»] chr1 (10 HSPs)
chr1 (37-191)||(36305433-36305587)
chr1 (53-199)||(48266071-48266217)
chr1 (109-199)||(4644654-4644744)
chr1 (37-199)||(21527802-21527964)
chr1 (37-191)||(36928816-36928970)
chr1 (37-191)||(14365962-14366116)
chr1 (36-245)||(37530158-37530368)
chr1 (37-191)||(47115937-47116091)
chr1 (154-191)||(14119413-14119451)
chr1 (110-191)||(52336311-52336392)
[»] scaffold0418 (1 HSPs)
scaffold0418 (37-199)||(7316-7478)
[»] chr4 (5 HSPs)
chr4 (37-199)||(7663575-7663737)
chr4 (53-199)||(8655426-8655572)
chr4 (37-199)||(3130316-3130478)
chr4 (148-196)||(25875138-25875186)
chr4 (37-199)||(47540566-47540728)
[»] chr2 (6 HSPs)
chr2 (37-199)||(45421159-45421321)
chr2 (23-253)||(31774270-31774501)
chr2 (153-246)||(26681474-26681568)
chr2 (154-199)||(22052268-22052313)
chr2 (163-246)||(31594147-31594231)
chr2 (36-104)||(43627235-43627303)
[»] scaffold0029 (1 HSPs)
scaffold0029 (39-199)||(134975-135135)
[»] scaffold0002 (2 HSPs)
scaffold0002 (39-199)||(312802-312962)
scaffold0002 (39-199)||(328256-328416)
[»] chr6 (7 HSPs)
chr6 (153-246)||(8873279-8873373)
chr6 (37-191)||(33629746-33629900)
chr6 (153-253)||(4406598-4406699)
chr6 (36-205)||(1682680-1682850)
chr6 (154-196)||(25317498-25317540)
chr6 (154-196)||(26204992-26205034)
chr6 (154-186)||(19348919-19348951)
[»] scaffold0197 (1 HSPs)
scaffold0197 (109-191)||(12279-12361)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 6020555 - 6020293
Alignment:
Q  23 aggtggaggtaaagctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatata 122  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||| |||||||| ||||||  |||||||||||||||||    
T  6020555 aggtggaggtaaagctagatgttcttttcagcaacttatatggctcctttatgtctgggttgtgtggaatgagcgtaataatcgcttgtttaataatata 6020456  T
Q  123 atcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctac-tttacttttagaacttaacaatggt 221  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  6020455 atcactcacataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttttacttttggaacttaagaatggt 6020356  T
Q  222 ggtcgagccctttagcttgtttgggcataggcagatgttgtttgtttggttctttgtgtctctg 285  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  6020355 ggtcgagccctttagcttgttt-ggcataggctgatgctgtttgtttggttctttgtgtctctg 6020293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 31862410 - 31862164
Alignment:
Q  23 aggtggaggtaaagctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatata 122  Q
    |||||| || ||||||||||| ||||||  |||||| ||||||||  |||||||||||||| ||| |||||| ||||||||   |||||||||| ||||     
T  31862410 aggtggtggcaaagctagacggtctttcatgcaactaatatggcttctttgtgtctgggttttgtggaatgaacataataatcacttgtttaatgatatt 31862311  T
Q  123 atcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaa-atctactttacttttagaacttaacaatggt 221  Q
       | |||||| ||||| ||| |  ||||||||||  || |||||||||| |||||||||||||||||  ||   |||  |||| | ||| ||   ||||    
T  31862310 gcaatttccattccccgattgttggacaaagttaaattgatgtctttaggatggctgaaagctaaaaatgtcacttttgtttttggtactcaaacttggt 31862211  T
Q  222 ggtcgagccctttagcttgtttgggcataggcagatgttgtttgttt 268  Q
    |||||| |||||||||||||||| |||||||  ||||||||||||||    
T  31862210 ggtcgaaccctttagcttgtttgagcataggttgatgttgtttgttt 31862164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 10487243 - 10487405
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  |||||| ||||||||||| ||||||||  |||||  |  ||||||||||| |||| |||||||| |     
T  10487243 ctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaataacttccattct 10487342  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  | || || ||||||||||| |||| |||| |||||||||||||| |||||||    
T  10487343 ccgtttgttagataaggtcaagatgttgtccttagcttggttgaaagctaaaaaagctacttt 10487405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 587208 - 587157
Alignment:
Q  148 acaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||| |||||||    
T  587208 acaaagttaagatgttgtcattaggttggttgaaacctaaaaaaactacttt 587157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 6264651 - 6264697
Alignment:
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||    
T  6264651 gttaagttgttgtctttaggttggttgaaagctaaaaaagctacttt 6264697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 34480760 - 34480600
Alignment:
Q  36 gctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatac 135  Q
    ||||||||||||||   |||||||||||||||  | |||||||||||||| | |||||| | ||||||  |  |||||||| || |  | ||  |||| |    
T  34480760 gctagacgttcttttatgcaacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataatcgtctgtttaatcatgtggttacccccatcc 34480661  T
Q  136 cccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    |  |||| ||  | || |||||| || ||||||||||||||||||||||||||||| ||||    
T  34480660 cttgtttacttgataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctac 34480600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 32918003 - 32917961
Alignment:
Q  154 ttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||    
T  32918003 ttaagatgttgtctttaggttggcttaaagttaaaaaagctac 32917961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 15500108 - 15500145
Alignment:
Q  162 ttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  15500108 ttgtctttaggttggcttaaagctaaaaaagctacttt 15500145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 12379048 - 12379289
Alignment:
Q  23 aggtggaggtaaagctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatata 122  Q
    |||||| ||||||||||||||||||||   ||||||  |||||||  | |||| ||| ||||||| |||||| |  ||||| ||| ||||||||||| ||    
T  12379048 aggtggtggtaaagctagacgttcttttatgcaactcgtatggcttctgtgtgcctgcgttgtgtggaatgaacgaaataaatgcctgtttaataatgta 12379147  T
Q  123 atcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatct-actttacttttagaacttaacaatggt 221  Q
     | ||| |||| ||| ||||  |  |||| |||||| |||||||||||||||||||||||||||||||| || |||||  |||| ||||  | |||||||    
T  12379148 gttactcccatcccctgtttattagacaatgttaagttgttgtctttaggttggctgaaagctaaaaaagctaactttgtttttggaacacagcaatggt 12379247  T
Q  222 ggtcgagccctttagcttgtttgggcataggcagatgttgtt 263  Q
    |||| | |||  | | ||||||||||||||||  ||||||||    
T  12379248 ggtcaaacccgcttgtttgtttgggcataggctaatgttgtt 12379289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 968169 - 968041
Alignment:
Q  155 taagatgttgtctttaggttggctgaaagctaaaaaatctacttt-acttttagaacttaacaatggtggtcgagccctttagcttgtttgggcataggc 253  Q
    |||| ||||||||||||| || ||||||||||||||| | | ||| |||| | ||||| ||||||||||||| | ||||||| |||||||||||||||||    
T  968169 taaggtgttgtctttaggatgactgaaagctaaaaaaaccatttttacttatggaactcaacaatggtggtcaaaccctttaacttgtttgggcataggc 968070  T
Q  254 agatgttg-tttgtttggttctttgtgtc 281  Q
      |||||| ||||||| |||| |||||||    
T  968069 caatgttgttttgtttagttccttgtgtc 968041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 15654042 - 15654204
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  ||||||  || ||||||| |||||| |  |||||  |  ||||||||||| |||| ||| |||| ||    
T  15654042 ctagacgttcttttatgcaacttatatggcttctttgtgcatgagttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactcccattcc 15654141  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  |||| || ||||||||||||||||| ||| |||||||||| ||| |||||||    
T  15654142 ccgtttgttagacaaggtaaagatgttgtctttaggatggttgaaagctaataaaactacttt 15654204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 46623507 - 46623345
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  ||||||  ||||| ||||  ||||| |  |||||  |  ||||||||||| |||| |||  ||| ||    
T  46623507 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggtcgtgtgaaatgaacgaaataatcgtctgtttaataatgtaataactctcattcc 46623408  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  |||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  46623407 ccgtttgttagacaaggttaagatgttgtccttaggatggttgaaagctaaaaaagctacttt 46623345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 3104604 - 3104547
Alignment:
Q  139 gtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  3104604 gtttgctagacaaggttaagatgttgtctttaggttggctgaaagctaaaaaagctac 3104547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 692120 - 692151
Alignment:
Q  218 tggtggtcgagccctttagcttgtttgggcat 249  Q
    ||||||||||||||||||||||||||||||||    
T  692120 tggtggtcgagccctttagcttgtttgggcat 692151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 21277460 - 21277542
Alignment:
Q  109 tgtttaataatataatcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    ||||||||||| |||| ||| | || | ||||||| |  |||| || ||||||||||| ||||||||| ||||||||||||||    
T  21277460 tgtttaataatgtaataactcctatcctccgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagctaaaaaa 21277542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 31216814 - 31217078
Alignment:
Q  23 aggtggaggtaaagctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatata 122  Q
    |||||| |||||||||| | ||||||||  |||||| || | |||| ||| ||  |||||||||| ||||||||  ||||   |||||||| | ||| ||    
T  31216814 aggtggcggtaaagctaaaggttctttcatgcaactcatttcgctcctttatgcttgggttgtgtggaatgagcgcaatagtcgcttgttttaaaatgta 31216913  T
Q  123 atcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa-tctactttacttttagaacttaacaatggt 221  Q
    || | | ||||  || |||||||  | || || ||||||||||||||||||||||| |||||||||||  ||   ||||||| | ||||| | |||||||    
T  31216914 attattcccatttcctgtttgcttgaaaaggtcaagatgttgtctttaggttggctaaaagctaaaaatgtcatttttacttatggaactcagcaatggt 31217013  T
Q  222 ggtcgagccctttagcttgtttgggcataggcagatgttgtt-tgtttggttctttgtgtctctg 285  Q
    |||| ||||||||| |||||||||||||||||  |||||||| |||| | |||||||||| ||||    
T  31217014 ggtctagccctttaacttgtttgggcataggctaatgttgttatgttggattctttgtgtttctg 31217078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 7452155 - 7452001
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  |||||| ||||||||||| |||||| || |||||  |  ||||||||||| | || ||| |||| ||    
T  7452155 ctagacgttcttttatgcaacttatatggctactttgtgactgggttgtgtggaatgaacaaaataatcgtctgtttaataatgttataactcccatccc 7452056  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    ||||||| |  |||| || ||||||||||| ||||||||| ||||||||||||||    
T  7452055 ccgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagctaaaaaa 7452001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 39483188 - 39483309
Alignment:
Q  148 acaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt-acttttagaacttaacaatggtggtcgagccctttagcttgtttggg 246  Q
    ||||||||||| || ||||| |||| ||||||||||||||||||   ||||| | |||| | ||| |    |||||||||||||||||||| ||||||||    
T  39483188 acaaagttaagttgatgtctctagggtggctgaaagctaaaaaagtcacttttatttttggtactcagacttggtggtcgagccctttagcatgtttggg 39483287  T
Q  247 cataggcagatgttgtttgttt 268  Q
    ||||| |  ||||| |||||||    
T  39483288 catagacttatgttttttgttt 39483309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 412819 - 412911
Alignment:
Q  154 ttaagatgttgtctttaggttggctgaaagctaaaaaatcta-ctttacttttagaacttaacaatggtggtcgagccctttagcttgtttgg 245  Q
    ||||| || ||||||||||||||||||||||||||||| ||| ||||  |||| ||| | |||| |||||||| |||||| | | ||||||||    
T  412819 ttaagttgctgtctttaggttggctgaaagctaaaaaaactacctttgtttttggaattcaacagtggtggtcaagccctcttgtttgtttgg 412911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 16421345 - 16421430
Alignment:
Q  36 gctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatat 121  Q
    ||||||||||||||   |||||| ||||||||  | ||||| |||||||||| |||||||| ||| ||| | ||||||||| ||||    
T  16421345 gctagacgttcttttatgcaactaatatggcttctatgtgtttgggttgtgtggaatgagcgtaacaaccgtttgtttaatcatat 16421430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 30167682 - 30167844
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  ||||||  |||||||||| |||||| |  |||||  |  ||||||||||| |||| |||  ||| ||    
T  30167682 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactctcattcc 30167781  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  ||||||||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  30167782 ccgtttgttagacaaagttaagatgttgtccttaggttggttgaaagctagaaaagctacttt 30167844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 24227507 - 24227405
Alignment:
Q  148 acaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctac-tttacttttagaacttaacaatggtggtcgagccctttagcttgtttggg 246  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||  ||| |||  |||||| ||| | |||||||||||| ||||||| |  ||||||||    
T  24227507 acaaagttaagatgttgtcgttaggttggttgaaagctaaaaaaattacttttgtttttagtactcagcaatggtggtcgtgcccttttgtctgtttggg 24227408  T
Q  247 cat 249  Q
    |||    
T  24227407 cat 24227405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 49732270 - 49732432
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  | |||| | ||||||||| ||| ||||  |||||  |  ||||||||||| |||| |||  ||| ||    
T  49732270 ctagacgttcttttatgcaacttatttggcttctctgtgcccgggttgtgtggaacgagcgaaataatcgtctgtttaataatgtaataactctcattcc 49732369  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  |||| || ||||||||||| |||| |||| |||||||||||||| |||||||    
T  49732370 ccgtttgttagacaaggtcaagatgttgtccttagcttggttgaaagctaaaaaagctacttt 49732432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 28675377 - 28675498
Alignment:
Q  148 acaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctactttactttt-agaacttaacaatggtggtcgagccctttagcttgtttggg 246  Q
    |||| |||||||||||||||||||| ||| |||||| ||||||| |||||||  ||||  | ||  |  | ||||||||||| ||||||| |||||||||    
T  28675377 acaaggttaagatgttgtctttaggctggttgaaagttaaaaaagctacttttgttttcggtacgcagtagtggtggtcgagtcctttagtttgtttggg 28675476  T
Q  247 cataggcagatgttgtttgttt 268  Q
    |||| ||  ||| |||||||||    
T  28675477 catatgctaatgctgtttgttt 28675498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 9378789 - 9378741
Alignment:
Q  148 acaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| ||||    
T  9378789 acaaggttaagatgttgtctttaggttggctaaaagttaaaaaagctac 9378741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 25873565 - 25873603
Alignment:
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    |||||| || |||||||||||||||||||||||||||||    
T  25873565 gttaagttgatgtctttaggttggctgaaagctaaaaaa 25873603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 7146845 - 7146777
Alignment:
Q  36 gctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataac 104  Q
    ||||||||||||||   |||||||||||||||  |||||| ||||||||| | |||||| | |||||||    
T  7146845 gctagacgttcttttttgcaacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataac 7146777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 15484301 - 15484333
Alignment:
Q  217 atggtggtcgagccctttagcttgtttgggcat 249  Q
    ||||||||| |||||||||||||||||||||||    
T  15484301 atggtggtcaagccctttagcttgtttgggcat 15484333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 36708507 - 36708475
Alignment:
Q  217 atggtggtcgagccctttagcttgtttgggcat 249  Q
    ||||||||| |||||||||||||||||||||||    
T  36708507 atggtggtcaagccctttagcttgtttgggcat 36708475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 36305587 - 36305433
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  |||||||||||||||||| |||||| |  |||||  |  ||||||||||| |||| ||| |||| |     
T  36305587 ctagacgttcttttatgcaacttatatggctactttgtgtctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactcccattct 36305488  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    ||||||| |  |||| || ||||||||||| ||||||||| ||||||||||||||    
T  36305487 ccgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagctaaaaaa 36305433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 48266071 - 48266217
Alignment:
Q  53 gcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccataccccgtttgctcaacaaa 152  Q
    ||||||||| |||||  | |||||||||||||||| ||||||||  |||||  |  ||||||||||| |||| |||  ||| ||||||||| |   |||     
T  48266071 gcaacttatttggcttctctgtgtctgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaataactctcattccccgtttgttaggcaag 48266170  T
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    || ||||||||||| |||| |||| |||||||||||||| |||||||    
T  48266171 gtcaagatgttgtccttagcttggttgaaagctaaaaaaactacttt 48266217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 4644744 - 4644654
Alignment:
Q  109 tgtttaataatataatcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||||||| |||| |||||||| ||| ||||| |  |||| || ||||||||||| ||||||||| ||||||| |||||| |||||||    
T  4644744 tgtttaataatgtaataacttccattcccagtttgttagacaaggtcaagatgttgtccttaggttggttgaaagcaaaaaaagctacttt 4644654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 21527964 - 21527802
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  | |||| ||||||||||| ||||||||  |||||  |  ||||||||||| |||| ||| |||| ||    
T  21527964 ctagacgttcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaatgagcgaaataatcgactgtttaataatgtaataactcccattcc 21527865  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  | || || |||||||| || |||| |||| |||| ||||||||| |||||||    
T  21527864 ccgtttgttagataaggtcaagatgttatccttagcttggttgaaggctaaaaaagctacttt 21527802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 36928970 - 36928816
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  ||||||  |||||||||| |||||| |  |||||  |  ||||||||||| | || ||| |||| ||    
T  36928970 ctagacgttcttttatgcaacttatttggctactttgtgcttgggttgtgtggaatgaacgaaataatcgtctgtttaataatgttataactcccatccc 36928871  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
     |||||| |  |||| || ||||||||||| ||||||||| ||||||||||||||    
T  36928870 tcgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagctaaaaaa 36928816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 14365962 - 14366116
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| | |||  | ||||  |||||||||| ||||||||  |||||  |  ||||||||||| |||| |||  ||| ||    
T  14365962 ctagacgttcttttatgcaacttatttagcttctctgtgcttgggttgtgtggaatgagcgaaataatcgtctgtttaataatgtaataactctcattcc 14366061  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    ||||||| |  |||| || ||||||||||| |||| |||| ||||||||||||||    
T  14366062 ccgtttgttagacaaggtcaagatgttgtccttagcttggttgaaagctaaaaaa 14366116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 37530368 - 37530158
Alignment:
Q  36 gctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatac 135  Q
    ||||||||||||||   |||||| ||||||||  | |||||||||||||| | |||||| | ||||||  | ||||||||| || |  | ||  |||| |    
T  37530368 gctagacgttcttttatgcaactaatatggcttctatgtgtctgggttgtttggaatgaacttaataatcgtttgtttaatcatgttgttacccccatcc 37530269  T
Q  136 cccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatcta-ctttacttttagaacttaacaatggtggtcgagcccttt 234  Q
    |  |||| ||  | || |||||| || ||||||||||||||||||||||||||||| ||| ||||  |||| ||||| | || |||||||| |||||| |    
T  37530268 cttgtttacttgataaggttaagttgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaagccctct 37530169  T
Q  235 agcttgtttgg 245  Q
     | ||||||||    
T  37530168 tgtttgtttgg 37530158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 47116091 - 47115937
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||| ||||||| || ||||||| ||| ||||||| |||||| || |||||  |  ||||||||||| |||| |||  ||| ||    
T  47116091 ctagacgttcttttatgcaatttatatgacttttttgtgcctgagttgtgtggaatgaacaaaataatcgtctgtttaataatgtaataactctcattcc 47115992  T
Q  137 ccgtttgctca-acaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    | ||||| ||| |||| || ||||||||||| ||||  ||| ||||||||||||||    
T  47115991 ctgtttg-tcagacaaggtaaagatgttgtccttagaatggttgaaagctaaaaaa 47115937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 14119451 - 14119413
Alignment:
Q  154 ttaagatgttgtcttt-aggttggctgaaagctaaaaaa 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  14119451 ttaagatgttgtcttttaggttggctgaaagctaaaaaa 14119413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 52336392 - 52336311
Alignment:
Q  110 gtttaataatataatcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    |||||||||| |||| |||| ||| ||||||||| |  |||| || ||||||||||| |||| |||| |||||| |||||||    
T  52336392 gtttaataatgtaataactttcattccccgtttgttagacaaggtcaagatgttgtccttagcttggttgaaagataaaaaa 52336311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 7478 - 7316
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  ||||||  |||||||||| |||||| |  |||||  |  ||||||||||| |||| |||  ||| ||    
T  7478 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactctcattcc 7379  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  |||| |||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  7378 ccgtttgttagacaaggttaagatgttgtccttaggttggttgaaagctagaaaagctacttt 7316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 7663575 - 7663737
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  ||||||  |||||||||| |||||| |  |||||  |  ||||||||||| |||| |||  ||| ||    
T  7663575 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactctcattcc 7663674  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  |||| |||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  7663675 ccgtttgttagacaaggttaagatgttgtccttaggttggttgaaagctagaaaagctacttt 7663737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 8655426 - 8655572
Alignment:
Q  53 gcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccataccccgtttgctcaacaaa 152  Q
    ||||||||| |||||  | |||| ||||||||||| ||||||||  |||||  || ||||||||||| |||| ||| |||| ||||||||| |  | ||     
T  8655426 gcaacttatttggcttctctgtgcctgggttgtgtggaatgagcgaaataatcgcctgtttaataatgtaataactcccattccccgtttgttagataag 8655525  T
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    || ||||||||||| |||| |||| |||| ||||||||| |||||||    
T  8655526 gtcaagatgttgtccttagcttggttgaaggctaaaaaagctacttt 8655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 3130316 - 3130478
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  |||||| ||||||||||| |||||| || |||||  |  ||||||||||| |||| |||  ||| ||    
T  3130316 ctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtgtggaatgaacaaaataatcgtctgtttaataatgtaataactctcattcc 3130415  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||| ||| |  |||| || ||  ||||||| |||| |||| |||||||||||||| |||||||    
T  3130416 ccgcttgttagacaaggtcaaattgttgtccttagcttggttgaaagctaaaaaaactacttt 3130478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 25875138 - 25875186
Alignment:
Q  148 acaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  25875138 acaaggttaagatgttgtctttaggttggttgaaagctaaaaaaactac 25875186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 47540728 - 47540566
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  | |||| ||||||||||| |||||| |  |||||  |  ||||||||||| |||| |||  |||  |    
T  47540728 ctagacgttcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactctcatttc 47540629  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||||| |  |||| || ||||||||||| |||  |||| |||||||||||||| |||||||    
T  47540628 ccgtttgttagacaaggtcaagatgttgtccttaacttggttgaaagctaaaaaagctacttt 47540566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 45421321 - 45421159
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   |||||||||||||||  ||||||  |||||||||| |||||| |  |||||  |  ||||||||||| |||| |||  ||| ||    
T  45421321 ctagacgttcttttatgcaacttatatggcttctttgtgcatgggttgtgtggaatgaacgcaataatcgtctgtttaataatgtaataactcacattcc 45421222  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
     |||||| |  ||||||||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  45421221 acgtttgttagacaaagttaagatgttgtccttaggttggttgaaagctagaaaagctacttt 45421159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 31774501 - 31774270
Alignment:
Q  23 aggtggaggtaaagctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatata 122  Q
    |||||| |||||||||| | ||||||||  |||||| || || ||  ||||||  || ||||||| |||||||   ||||   |||||||||| ||| |     
T  31774501 aggtggcggtaaagctaaatgttctttcatgcaactcatctgacttctttgtgcttgagttgtgtggaatgagggcaatagtcgcttgtttaaaaatgtt 31774402  T
Q  123 atcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatcta-ctttacttttagaacttaacaatggt 221  Q
    || ||| |||| ||| |||||||  | || |||||||||||||||||||| | |||||||||||||||  | |  ||||||| | ||||| | || ||||    
T  31774401 attactcccattccctgtttgcttgataaggttaagatgttgtctttaggattgctgaaagctaaaaatgccatttttacttatggaactcagcagtggt 31774302  T
Q  222 ggtcgagccctttagcttgtttgggcataggc 253  Q
    |||| ||||||||| |||| ||||| ||||||    
T  31774301 ggtctagccctttaacttgcttgggtataggc 31774270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 26681568 - 26681474
Alignment:
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaatcta-ctttacttttagaacttaacaatggtggtcgagccctttagcttgtttggg 246  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||  |||| ||||| |||| |||||||| | |||| | | |||||||||    
T  26681568 gttaagttgttgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcaacagtggtggtcaaaccctcttgtttgtttggg 26681474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 22052313 - 22052268
Alignment:
Q  154 ttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  22052313 ttaagttgttgtctttaggttggcttaaagctaaaaaagctacttt 22052268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 31594231 - 31594147
Alignment:
Q  163 tgtctttaggttggctgaaagctaaaaaatcta-ctttacttttagaacttaacaatggtggtcgagccctttagcttgtttggg 246  Q
    ||||||||||||||||||||||||||||| ||| ||||  |||| ||||| | || |||||||| |||||| | | |||||||||    
T  31594231 tgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaagccctcttgtttgtttggg 31594147  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 43627303 - 43627235
Alignment:
Q  36 gctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataac 104  Q
    ||||||||||||||   |||||||||||||||  |||||| ||||||||| | |||||| | |||||||    
T  43627303 gctagacgttcttttatgcaacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataac 43627235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 134975 - 135135
Alignment:
Q  39 agacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacccc 138  Q
    |||||||||||   ||||||||| |||||  | ||||  |||||||||| ||||||||  |||||  || ||||||||||| |||| ||| |||| ||||    
T  134975 agacgttcttttatgcaacttatttggcttctctgtgcttgggttgtgtcgaatgagcgaaataatcgcctgtttaataatgtaataactcccattcccc 135074  T
Q  139 gtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||| |  | || || ||||||||||| |||| |||| |||| ||||||||| |||||||    
T  135075 gtttgttagataaggtcaagatgttgtccttagcttggttgaaggctaaaaaagctacttt 135135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 312802 - 312962
Alignment:
Q  39 agacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacccc 138  Q
    |||||||||||   ||||||||| |||||  | ||||  |||||||||| ||||||||  |||||  || ||||||||||| |||| ||| |||| ||||    
T  312802 agacgttcttttatgcaacttatttggcttctctgtgcttgggttgtgtcgaatgagcgaaataatcgcctgtttaataatgtaataactcccattcccc 312901  T
Q  139 gtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||| |  | || || ||||||||||| |||| |||| |||| ||||||||| |||||||    
T  312902 gtttgttagataaggtcaagatgttgtccttagcttggttgaaggctaaaaaagctacttt 312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 328256 - 328416
Alignment:
Q  39 agacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacccc 138  Q
    |||||||||||   ||||||||| |||||  | ||||  |||||||||| ||||||||  |||||  || ||||||||||| |||| ||| |||| ||||    
T  328256 agacgttcttttatgcaacttatttggcttctctgtgcttgggttgtgtcgaatgagcgaaataatcgcctgtttaataatgtaataactcccattcccc 328355  T
Q  139 gtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaatctacttt 199  Q
    ||||| |  | || || ||||||||||| |||| |||| |||| ||||||||| |||||||    
T  328356 gtttgttagataaggtcaagatgttgtccttagcttggttgaaggctaaaaaagctacttt 328416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 8873279 - 8873373
Alignment:
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaatcta-ctttacttttagaacttaacaatggtggtcgagccctttagcttgtttggg 246  Q
    |||||| || ||||||||||||||||||||||||||||| ||| ||||  |||| ||||| |||| |||||||| |||||| | | |||||||||    
T  8873279 gttaagttgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcaacagtggtggtcaagccctcttgtttgtttggg 8873373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 33629900 - 33629746
Alignment:
Q  37 ctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatacc 136  Q
    |||||||||||||   ||||||||| |||||  | |||| ||||||||||| |||| | |  |||||  || |||||||||||||||| ||| |||| ||    
T  33629900 ctagacgttcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaattaacgaaataatcgcctgtttaataatataataactcccattcc 33629801  T
Q  137 ccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    ||||||| |  |||| || ||  ||||||| |||| |||| ||||||||||||||    
T  33629800 ccgtttgttagacaaggtcaaattgttgtccttagcttggttgaaagctaaaaaa 33629746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 4406699 - 4406598
Alignment:
Q  153 gttaagatgttgtctttaggttggctgaaagctaaaaaatctac-tttacttttagaacttaacaatggtggtcgagccctttagcttgtttgggcatag 251  Q
    ||||| ||||||||||||||||||||||||||||| ||| | || |||  |||| | ||| |    |||| |||||||||||||||||||||||||||||    
T  4406699 gttaaaatgttgtctttaggttggctgaaagctaagaaagccacatttggttttggtactcagaggtggtagtcgagccctttagcttgtttgggcatag 4406600  T
Q  252 gc 253  Q
    ||    
T  4406599 gc 4406598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 1682850 - 1682680
Alignment:
Q  36 gctagacgttctttccagcaacttatatggctcttttgtgtctgggttgtgtagaatgagcataataactgcttgtttaataatataatcacttccatac 135  Q
    ||||||||||||||   ||||||||| |||||  | |||| ||||||||||| |||||| |  |||||  |  ||||||||||| |||| |||  ||| |    
T  1682850 gctagacgttcttttatgcaacttatttggcttctctgtgcctgggttgtgtggaatgaacgaaataatcgtctgtttaataatgtaataactctcattc 1682751  T
Q  136 cccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaa-atctactttactttt 205  Q
    |||||||| |  |||| || ||  ||||||| |||| |||| ||||||||||||| | |||||||||||||    
T  1682750 cccgtttgttagacaaggtcaaattgttgtccttagcttggttgaaagctaaaaataactactttactttt 1682680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 25317540 - 25317498
Alignment:
Q  154 ttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||    
T  25317540 ttaagatgttgtctttaggttggcttaaagttaaaaaaactac 25317498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 26205034 - 26204992
Alignment:
Q  154 ttaagatgttgtctttaggttggctgaaagctaaaaaatctac 196  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||    
T  26205034 ttaagatgttgtctttaggttggcttaaagttaaaaaaactac 26204992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 19348951 - 19348919
Alignment:
Q  154 ttaagatgttgtctttaggttggctgaaagcta 186  Q
    ||||||||||||||||||||||||| |||||||    
T  19348951 ttaagatgttgtctttaggttggcttaaagcta 19348919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 12279 - 12361
Alignment:
Q  109 tgtttaataatataatcacttccataccccgtttgctcaacaaagttaagatgttgtctttaggttggctgaaagctaaaaaa 191  Q
    ||||||||||| |||| ||| | || ||||||||| |  |||| || ||||||||||| ||||||||| ||||||||||||||    
T  12279 tgtttaataatgtaataactcctatcccccgtttgttagacaaggtaaagatgttgtccttaggttggttgaaagctaaaaaa 12361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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