View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_low_14 (Length: 229)
Name: NF14466_low_14
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 11493635 - 11493444
Alignment:
| Q |
29 |
gaaacaagggacaacatgctgatattgagactcatgttaaagtgaacaataatggtatataacgttttatgcttatgcagttttcataatgtaaatttat |
128 |
Q |
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| T |
11493635 |
gaaacaagggacaacatgctgatattgagactcatgttaaagtgaacaataatggtatataacgttttatgcttctgcaatttttataatgtaaatttgt |
11493536 |
T |
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| Q |
129 |
ttgtatactcaaatcannnnnnngctcttgatagagattaataagtctagagatgatgtttacatcagttcccaactcatacagcctatgct |
220 |
Q |
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| T |
11493535 |
ttgtatactcaaatcattattttgctcttgatagagattaataagtctagagatgatgtttacatcagttcccaactcaaacagcctatgct |
11493444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 19890545 - 19890736
Alignment:
| Q |
29 |
gaaacaagggacaacatgctgatattgagactcatgttaaagtgaacaataatggtatataacgttttatgcttatgcagttttcataatgtaaatttat |
128 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| | |
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| T |
19890545 |
gaaataagggacaacatgctgatattgagactcatgttaaattgaataataatggtatataacgttttatgcttctgcaattttcataatgtaaatttgt |
19890644 |
T |
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| Q |
129 |
ttgtatactcaaatcannnnnnngctcttgatagagattaataagtctagagatgatgtttacatcagttcccaactcatacagcctatgct |
220 |
Q |
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| T |
19890645 |
ttgtatactcaaatcatttttttgctcttgatagagattaataagtctagagatgatgtttacatcagttcccaactcaaacagcctatgct |
19890736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 18596771 - 18596720
Alignment:
| Q |
39 |
acaacatgctgatattgagactcatgttaaagtgaacaataatggtatataa |
90 |
Q |
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| T |
18596771 |
acaaaatgctgatgttgagacacatgttacagtgaacaatgatggtatataa |
18596720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 8723503 - 8723547
Alignment:
| Q |
46 |
gctgatattgagactcatgttaaagtgaacaataatggtatataa |
90 |
Q |
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| T |
8723503 |
gctgatgttgagacacatgttacagtgaacaatgatggtatataa |
8723547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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