View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_low_16 (Length: 217)
Name: NF14466_low_16
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15546698 - 15546499
Alignment:
| Q |
1 |
tttccttcaacctttgctacttctgtttgaatagcaacatctacaagcacatcaccttctccactattttcctttgaaaatatcttctcccatctttgct |
100 |
Q |
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|||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15546698 |
tttccttcaaccttagcaatttctgtttgaataacaacatctacaagcacatcaccttctccactattttcctttgaaaaaatcttctcccatctttgct |
15546599 |
T |
|
| Q |
101 |
caagtgttagctcatagaatgttgatatcttcatatgctcctttaaattcattccttccttcacaaacataaatggacaataccactttccaacaaccac |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15546598 |
caagtgttagctcatagaatgttgacatcttcatatgctcctttaaattcattccttccttcacaaacataaatggacaataccactttccaacaaccac |
15546499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15519451 - 15519252
Alignment:
| Q |
1 |
tttccttcaacctttgctacttctgtttgaatagcaacatctacaagcacatcaccttctccactattttcctttgaaaatatcttctcccatctttgct |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519451 |
tttccttcaaccttagcaacttctgtttgaatagcaacatctacaaccacaccaccttctccactattttcctttgaaaatatcttctcccatctttgct |
15519352 |
T |
|
| Q |
101 |
caagtgttagctcatagaatgttgatatcttcatatgctcctttaaattcattccttccttcacaaacataaatggacaataccactttccaacaaccac |
200 |
Q |
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||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
15519351 |
caagtgttagctcatagaacattgacatcttcatttgctcttttaaattcattccttccttaacaaacataaaaggacaataccactttccaacaaccac |
15519252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15529190 - 15528991
Alignment:
| Q |
1 |
tttccttcaacctttgctacttctgtttgaatagcaacatctacaagcacatcaccttctccactattttcctttgaaaatatcttctcccatctttgct |
100 |
Q |
| |
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|||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15529190 |
tttctttcaaccttagcaacttctgtttgaatagcaacatctacaagcacaccaccttctccactattttcctttgaaaatatcttctcccatctttgct |
15529091 |
T |
|
| Q |
101 |
caagtgttagctcatagaatgttgatatcttcatatgctcctttaaattcattccttccttcacaaacataaatggacaataccactttccaacaaccac |
200 |
Q |
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|||||||||||||||| || |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15529090 |
caagtgttagctcataaaacattgacgtcttcatctgctcctttaaattctttccttccttcacaaacataaatggacaataccactttccaacaaccac |
15528991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 15523109 - 15522908
Alignment:
| Q |
1 |
tttccttcaacctttgctacttctgtttgaatagcaacatctacaagcacatcaccttctccactattttc------ctttgaaaatatcttctcccatc |
94 |
Q |
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|||||||||| || || ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15523109 |
tttccttcaattttagcaacttctgtttgaataacaacatctacaaccacatcaccttctccactattttcattttcctttgaaaatatcttctcccatc |
15523010 |
T |
|
| Q |
95 |
tttgctcaagtgttagctcatagaatgttgatatcttcatatgctcctttaaattcattccttccttcacaaacataaatggacaataccactttccaac |
194 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
15523009 |
tttgctcaagtgttagctcatagaacattgacatcttcatctgctcctttaaattcattccttctttcacaaacataaaaggacaataccagtttccaac |
15522910 |
T |
|
| Q |
195 |
aa |
196 |
Q |
| |
|
|| |
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|
| T |
15522909 |
aa |
15522908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 15549404 - 15549266
Alignment:
| Q |
42 |
tacaagcacatcaccttctccactattttcctttgaaaatatcttctcccatctttgctcaagtgttagctcatagaatgttgatatcttcatatgctcc |
141 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |||||||| |||||| |
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| T |
15549404 |
tacaagcacatcaccttctccactattttcctttgaaaaattcttctcccatctttgct----------ctcatagaacactgacatcttcatttgctcc |
15549315 |
T |
|
| Q |
142 |
tttaaattcattccttccttcacaaacataaatggacaataccactttc |
190 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
15549314 |
tttaaattcactctttccatcacaaacataaatggacaataccactttc |
15549266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15551501 - 15551296
Alignment:
| Q |
1 |
tttccttcaacctttgctacttctgtttgaatagcaacatctacaagcacatcaccttctccact------attttcctttgaaaatatcttctcccatc |
94 |
Q |
| |
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|||| ||||||||| || |||||||||||||||||||||||||| | ||||||| | | ||| |||||| ||||||| |||||||||||||| |
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| T |
15551501 |
tttctttcaaccttagcaacttctgtttgaatagcaacatctactaacacatcattcttttcaccgttttcattttcttttgaaactatcttctcccatc |
15551402 |
T |
|
| Q |
95 |
tttgctcaagtgttagctcatagaatgttgatatcttcatatgctcctttaaattcattccttccttcacaaacataaatggacaataccactttccaac |
194 |
Q |
| |
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||||||| || || | ||||||||| |||||| | ||| || |||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
15551401 |
tttgctcgagcgtcaactcatagaacaatgatatttccatttgttcctttaatgtcattccttcctttacaaacataaaaggacaataccattttccaac |
15551302 |
T |
|
| Q |
195 |
aaccac |
200 |
Q |
| |
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|||||| |
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|
| T |
15551301 |
aaccac |
15551296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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