View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_low_4 (Length: 426)
Name: NF14466_low_4
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 34844883 - 34844483
Alignment:
| Q |
14 |
actgaaaacaataagggaattaactattaagtaaggaagaagaacaccatagacaacacttacttgcaacacaagctatcaaagcttaagcaagttaata |
113 |
Q |
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| T |
34844883 |
actgaaaacaataagggaattaactattaattaaggaagaagaacaccatagacaacacttacttgcaacacaagctatcaaagcttaagcaagttaata |
34844784 |
T |
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| Q |
114 |
aactacttcccatatttgtaggaaagtcagttatcatcctatgagattgagttcatagtagtttatcatgttctctcatagaaccacgataaataaatgt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34844783 |
aactacttcccatatttgtaggaaagtcagttatcatcctatgagattgagttcatagtagtttatcatgttctctcatagaaccacaataaataaatgt |
34844684 |
T |
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| Q |
214 |
aatagcttcattcacaagttaatnnnnnnnttatggttcatagatcaacttttctctcattttctcttattttcaatcagttcttaattctctcaacaat |
313 |
Q |
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| T |
34844683 |
aatagcttcattcacaagttaataaaaaaattatggttcatagatcaacttttctctcattttctcttattttcaatcagttcttaattctctcaacaat |
34844584 |
T |
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| Q |
314 |
ttgaattaattgttagtgtaaaaaagtttacacgcaaacatttaggattcctatgttggtgtaaaaaagtgtacac----gcaaatatataggttaaaaa |
409 |
Q |
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| T |
34844583 |
ttgaattaattgttagtgtaaaaaagtttacacgcaaacatttaggattcctatgttggtgtaaaaaagtgtacacgcaggcaaatatataggttaaaaa |
34844484 |
T |
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| Q |
410 |
t |
410 |
Q |
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| T |
34844483 |
t |
34844483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 21776953 - 21777014
Alignment:
| Q |
132 |
taggaaagtcagttatcatcctatgagattgagttcatagtagtttatcatgttctctcata |
193 |
Q |
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| T |
21776953 |
taggaaagttagttatcatcctatgagatagagttcttagtagcttatcatactctctcata |
21777014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 21776849 - 21776903
Alignment:
| Q |
45 |
taaggaagaagaacaccatagacaacacttacttgcaacacaagctatcaaagct |
99 |
Q |
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| T |
21776849 |
taaggaagaagaacaccatacatctcaattacttgcaacacaagctatcaaagct |
21776903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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