View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14466_low_5 (Length: 403)
Name: NF14466_low_5
Description: NF14466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14466_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 3937303 - 3937680
Alignment:
| Q |
18 |
aagatgtagaagattggcagatgaatgaagaagattgaggatggattgaa-------------gatgtagatcgaagaagaggaagaaatgggaaaaata |
104 |
Q |
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| T |
3937303 |
aagatgtagaagattggcagatgaatgaagaagattgaggatggattgaagatgtggaatgaagatgtagatcgaagaagaggaagaaatgggaaaaata |
3937402 |
T |
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| Q |
105 |
taaaaccgaatttttccccctattagattttgggtttgggatgaacttggtgatgaattttccctgttgttgtgctagctttgtgttgcaataacagaat |
204 |
Q |
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||||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3937403 |
taaaacctaattttccccccttttagattttgggtttggaatgaacttggtgatgaattttccctgttgttgtgctagctttgtgttgcaataacagaat |
3937502 |
T |
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| Q |
205 |
gttggtttgagattttaactttgatttcatgtgcttgtt-aactttgcttgtggatttgagtttagcaatgagaagaaaggcttttagtggtactgggtt |
303 |
Q |
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| T |
3937503 |
gttggtttggaattttaactttgctttcatgtgcttgttaaactttgcttgtggatttgagtttagcatgaagaagaaagacttttagtggtactgg--- |
3937599 |
T |
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| Q |
304 |
ttgagttttgatatggtgtgcagatttgttgagtttgcagatttggagttatacaagagatgagtgtttttgtgagattcatttt |
388 |
Q |
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| T |
3937600 |
----gttttgatatggtgtgcagatttgttgagtgtgcagatttggagttatacaagagatgagtgtttttgtgagattcatttt |
3937680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 34911313 - 34911191
Alignment:
| Q |
48 |
aagattgaggatggattgaagatgtagatcgaagaagaggaagaaatg---ggaaaaatataaaacc---gaatttttccccctattagattttgggttt |
141 |
Q |
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| T |
34911313 |
aagattgaggatgaattgaagatctacatcgaaaaagaggaagaaaggaaaaaaaaaatctaaaacccttgaatttttccccttttctgattttgggttt |
34911214 |
T |
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| Q |
142 |
gggatgaacttggtgatgaattt |
164 |
Q |
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| T |
34911213 |
gtgatgaagttcttgatgaattt |
34911191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 45619003 - 45619291
Alignment:
| Q |
16 |
ataagatgtagaagattggcagatgaatgaagaagattgaggatggattgaagatgtagatcgaagaagaggaagaaatgggaaaaatataaaaccgaat |
115 |
Q |
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| T |
45619003 |
ataagatgtagaagattggcagatgaatgaagaagattgaggatggattgaagatgtggatcgaagaagaggaagaaatgggaaaaatataaaacctaat |
45619102 |
T |
|
| Q |
116 |
ttttccccctattagattttgggtttgggatgaacttggtgatgaattttccctgttgttgtgctagctttgtgttgcaataacagaatgttggtttgag |
215 |
Q |
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| T |
45619103 |
tttccccccttttagattttggttttgggatgaacttggtgatgaattttccctgttgttgtgctagctttgtgttgcaataacaaaatgttggtttggg |
45619202 |
T |
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| Q |
216 |
attttaactttgatttcatgtgcttgttaactttgcttgtggatttgagtttagcaatgagaagaaaggcttttagtggtactgggttt |
304 |
Q |
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| T |
45619203 |
attttaactttgctttcatgtgcttgttaactttgcttgtggatttgagtttagcatgaagaagaaaggcttttagtagtactgggttt |
45619291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 45619301 - 45619350
Alignment:
| Q |
339 |
tgcagatttggagttatacaagagatgagtgtttttgtgagattcatttt |
388 |
Q |
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| T |
45619301 |
tgcagatttggagttatacaagagatgagtgtttttgtgagattcatttt |
45619350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 89 - 388
Target Start/End: Original strand, 36588719 - 36589011
Alignment:
| Q |
89 |
agaaatgggaaaaatataaaaccgaatttttccccctattagattttgggtttgggatgaacttggtgatgaattttccctgttgttgtgctagctttgt |
188 |
Q |
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||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36588719 |
agaaatgggaaaaatataaaacctaattttcccctcttttagattttgggtttgggatgaacttggtgatgaattttccttgttgttgtgctagctttgt |
36588818 |
T |
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| Q |
189 |
gttgcaataacagaatgttggtttgagattttaactttgatttcatgtgcttgttaactttgcttgtggatttgagtttagcaatgagaagaaaggcttt |
288 |
Q |
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| T |
36588819 |
gttgcaataacagaatgttggtttgggattttaactttgctttcatgtgcttgttaactttgcttgtggatttgagtttagcatgaagaagaaaggcttt |
36588918 |
T |
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| Q |
289 |
tagtggtactgggttttgagttttgatatggtgtgcagatttgttgagtttgcagatttggagttatacaagagatgagtgtttttgtgagattcatttt |
388 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36588919 |
tagtggtactgg-------gttttgatatggtgtgcagatttgttgagtgtgcggatttggagttatgcaagagatgagtgtttttgtgagattcatttt |
36589011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 30844027 - 30843961
Alignment:
| Q |
37 |
gatgaatgaagaagattgaggatggattgaagatgtagatcgaagaagaggaagaaatgggaaaaat |
103 |
Q |
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| T |
30844027 |
gatgaatgaagaagattgaggatggactgaagatgtagatcgaagaagaggaagaaaggggaaaaat |
30843961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 43733443 - 43733368
Alignment:
| Q |
18 |
aagatgtagaagattggcagatgaatgaagaagattgaggatggattgaagatgtagatcgaagaagaggaagaaa |
93 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
43733443 |
aagatatagaagattgatggatgaatgaagaagattgatgatggactgaagatgtagatcgaagaagaggaagaaa |
43733368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 45268095 - 45267975
Alignment:
| Q |
48 |
aagattgaggatggattgaagatgtagatcgaagaagaggaagaaatgggaaaaatataaaacc---gaatttttccccctatta-gatttt-gggtttg |
142 |
Q |
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||||||||||||| ||||||||| | |||||| |||||||||||| ||||||||| ||||||| ||| |||| ||||||||| |||||| ||||||| |
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| T |
45268095 |
aagattgaggatgaattgaagatctgcatcgaaaaagaggaagaaaagggaaaaatctaaaaccctagaagtttt-cccctattatgattttggggtttg |
45267997 |
T |
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| Q |
143 |
ggatgaacttggtgatgaattt |
164 |
Q |
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||||||| || |||||||||| |
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| T |
45267996 |
ggatgaagttcatgatgaattt |
45267975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 20391837 - 20391909
Alignment:
| Q |
79 |
aagaagaggaagaaatgggaaaaatataaaa-ccgaatttttccccctatt-agattttgggtttgggatgaa |
149 |
Q |
| |
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||||||||||||||| ||||||| | ||||| || || ||||||||| || ||||||||||||||||||||| |
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| T |
20391837 |
aagaagaggaagaaaggggaaaactctaaaaccctaaaatttcccccttttcagattttgggtttgggatgaa |
20391909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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