View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14467_low_11 (Length: 209)
Name: NF14467_low_11
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14467_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 8404637 - 8404453
Alignment:
| Q |
13 |
ataattcttcaaaatttaatattactactataaaactct--gcgatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacagcaacg |
110 |
Q |
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| T |
8404637 |
ataattcttcaaattttaatattactactataaaactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacg |
8404538 |
T |
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| Q |
111 |
tgacaattggaacacgcttttattaaactccatcaacatgataacactcacagcttcaacaatatctgctattgcatgttgtttt |
195 |
Q |
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| T |
8404537 |
tgacaattggaacacgcttttattaaactccatcaacatgataacactcacagcttcaacaatgtctgctattgcatgttgtttt |
8404453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 8368908 - 8368812
Alignment:
| Q |
65 |
ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac |
161 |
Q |
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| T |
8368908 |
ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8368812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 8400502 - 8400598
Alignment:
| Q |
65 |
ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac |
161 |
Q |
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| T |
8400502 |
ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8400598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 8422079 - 8422175
Alignment:
| Q |
65 |
ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac |
161 |
Q |
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| T |
8422079 |
ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac |
8422175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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