View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14467_low_3 (Length: 455)
Name: NF14467_low_3
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14467_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 30454287 - 30453862
Alignment:
| Q |
17 |
atattccctcattggattttaatattttcttaattatcattgattttgtaatgaggaaaacgttaatgtgatatacgtggaaaacgttaaggcaatactt |
116 |
Q |
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| T |
30454287 |
atattccctcattggattttaatcttttcttaattatcattgattttgtaatgaggaaaacgttaatgtgatatacgtggaaaacgttaaggcaatactt |
30454188 |
T |
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| Q |
117 |
gaggttaaggtgagtttcccaccatctaatacccatccctattttccctgaaaatattcaatttttggattaaaatttgtgtttttcatcaattttaatg |
216 |
Q |
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| T |
30454187 |
gaggttaaggtgagtttcccaccatctaatacccatccctattttctctgaaaatattcaatttttggattaaaatttgtgtttttcatcaattttaatg |
30454088 |
T |
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| Q |
217 |
ttgctggaaattgtgggtcataaaattatcatttcattannnnnnngaagacaattgaattatcattttaatcttaaaacctagaaataaaatcccagat |
316 |
Q |
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| T |
30454087 |
ttgctggaaattgtgggtcataaaattatcatttcattatttttttgaaggcaattgaattatcgttttaatcttaaaacctagaaataaaatctcagag |
30453988 |
T |
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| Q |
317 |
attatctttttattatattggcggttggctcatgtgttatatttcagatgactagtgatgtttgatctaatatgattttaatttgtgttttattatttac |
416 |
Q |
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| T |
30453987 |
attatcttt---ttatattggtggttggctcatgtgttacatttcagatgactagtgatgtttgatctaatatgattttaatttgtgttttattatttac |
30453891 |
T |
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| Q |
417 |
nnnnnnngggggtgcattttgcttctgtg |
445 |
Q |
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| T |
30453890 |
tttttttgggggtgcgttttgcttctgtg |
30453862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 24281836 - 24281787
Alignment:
| Q |
83 |
tgtgatatacgtggaaaacgttaaggcaatacttgaggttaaggtgagtt |
132 |
Q |
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| T |
24281836 |
tgtgatataggtggaaaatgttaaggcattacttgaggttgaggtgagtt |
24281787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 24281734 - 24281690
Alignment:
| Q |
205 |
tcaattttaatgttgctggaaattgtgggtcataaaattatcatt |
249 |
Q |
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| T |
24281734 |
tcaattttaatgttgtttgaaattgtgggtcatacaattatcatt |
24281690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 24281658 - 24281570
Alignment:
| Q |
317 |
attatcttttt-attatattggcggttggctcatgtgtt-atatttcagatgactagtgatgtttgatctaatatgattttaatttgtg |
403 |
Q |
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| T |
24281658 |
attatctttttgattatattggtggttgattcatgtgtttaaatttgagataacaagtgatgttgaatcttatatggttttaatttgtg |
24281570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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