View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14467_low_4 (Length: 281)
Name: NF14467_low_4
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14467_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 5532005 - 5531758
Alignment:
| Q |
22 |
gaatgtattaaaattggaaaaaagaaaatttaagtgtatcttttgtctgtaattttatggactaattaatttgaccaacgaaagatatatttgaggatca |
121 |
Q |
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| T |
5532005 |
gaatgtattaaaattggaaaaaagaaaatttaagtgtatcttttgtccgtaattttatggattaattaatttgaccaacgaaagatatatttgaggatca |
5531906 |
T |
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| Q |
122 |
aattaactaatgaaagatacattcaaggaccaaactcacttagcaaagacacatcatgttttgtaattttgacacatcaaggacttgcttgacacattaa |
221 |
Q |
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| T |
5531905 |
aactaactaatgaaagatacattcaaggaccaaactcacttagcaaagacacatcatgttttgtaattttgacacatcaaggacttgcttgacacattaa |
5531806 |
T |
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| Q |
222 |
agaacaaaaatgacagttttctcgaaatatgtaggcaataatcattcat |
270 |
Q |
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| T |
5531805 |
agaacaaaaatgacggttttctc-aaatatgtaggcaataatcattcat |
5531758 |
T |
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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 15316614 - 15316556
Alignment:
| Q |
117 |
gatcaaattaactaatgaaagatacattcaaggaccaaactcacttagcaaagacacat |
175 |
Q |
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| T |
15316614 |
gatcaaattaactaatgaaagatacattcaaggaccaaactcaccaaggaaagacacat |
15316556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 12544896 - 12544814
Alignment:
| Q |
93 |
tgaccaacgaaagatatatttgaggatcaaattaactaatgaaagatacattcaaggaccaaactcacttagcaaagacacat |
175 |
Q |
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| T |
12544896 |
tgactaacgaaagatacattcaaagatcaaactaactaataaaagatacatttgagaaccaaacacactaagaaaagacacat |
12544814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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