View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14467_low_6 (Length: 249)
Name: NF14467_low_6
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14467_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 44314376 - 44314584
Alignment:
| Q |
20 |
gaaattgcttattagaaaccaatttttccttcataggttccttctcagaataatcagaatctgaaagatccttatccttccttgattttctagtagtaga |
119 |
Q |
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| T |
44314376 |
gaaattgcttattagaaaccaatttttccttcataggttccttctcag---------aatctgaaagatccttatccttccttgattttctagtagtaga |
44314466 |
T |
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| Q |
120 |
agctccaactccaagggtcctttgtgcaatagagaaagaggataaccttatgacatttactacaaccttcattgatttctcacaaagagattcctcattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314467 |
agctccaactccaagggtcctttgtgcaatagagaaagaggataaccttatgacatttactacaaccttcattgatttctcacaaagagattcctcattc |
44314566 |
T |
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| Q |
220 |
ttggactttcctatgcta |
237 |
Q |
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|||||||||||||||||| |
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| T |
44314567 |
ttggactttcctatgcta |
44314584 |
T |
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