View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14467_low_7 (Length: 244)

Name: NF14467_low_7
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14467_low_7
NF14467_low_7
[»] chr2 (4 HSPs)
chr2 (11-229)||(16920978-16921196)
chr2 (173-230)||(7488774-7488831)
chr2 (154-226)||(44937798-44937870)
chr2 (83-127)||(27724244-27724288)
[»] chr6 (4 HSPs)
chr6 (23-229)||(286253-286459)
chr6 (23-104)||(2741756-2741837)
chr6 (25-70)||(29124307-29124352)
chr6 (25-70)||(32744734-32744779)
[»] chr4 (3 HSPs)
chr4 (24-199)||(48741856-48742031)
chr4 (18-100)||(42449933-42450015)
chr4 (24-105)||(44186226-44186307)
[»] chr3 (2 HSPs)
chr3 (87-202)||(2703740-2703855)
chr3 (173-228)||(5162445-5162500)
[»] chr5 (8 HSPs)
chr5 (28-226)||(42840388-42840586)
chr5 (89-202)||(9764519-9764632)
chr5 (18-85)||(42262530-42262597)
chr5 (24-105)||(15807590-15807671)
chr5 (33-80)||(16486625-16486672)
chr5 (28-227)||(28019143-28019342)
chr5 (173-220)||(40545118-40545165)
chr5 (173-226)||(42637370-42637423)
[»] chr1 (1 HSPs)
chr1 (173-227)||(368797-368851)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 16921196 - 16920978
Alignment:
Q  11 ataatacttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgacca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16921196 ataatacttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgacca 16921097  T
Q  111 ttcttccctgctccgattggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttcacaccaagttcacccaagattctta 210  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16921096 ttcttccctgctccgattggacgttcaatgccaagtaatggctcaacaacaaagacttcaacccatgattccttcacaccaagttcacccaagattctta 16920997  T
Q  211 tgtgaaaagtagttgtttc 229  Q
    |||||||||||||||||||    
T  16920996 tgtgaaaagtagttgtttc 16920978  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 7488774 - 7488831
Alignment:
Q  173 ccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgtttct 230  Q
    ||||||||| |||||||||| ||||||||| |||  |||||||||||||||| |||||    
T  7488774 ccatgattctttcacaccaatttcacccaaaattgatatgtgaaaagtagttatttct 7488831  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 44937798 - 44937870
Alignment:
Q  154 caacaacaaagacttcaacccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgt 226  Q
    |||||||||||| || |  ||||||||| ||||| || ||||||||||| |||  ||||||||||||||||||    
T  44937798 caacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagttgt 44937870  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 27724244 - 27724288
Alignment:
Q  83 atcatcttttctgaagaatatatgaccattcttccctgctccgat 127  Q
    |||||||||||| || ||||||| ||| |||||||||||||||||    
T  27724244 atcatcttttctcaaaaatatatcacccttcttccctgctccgat 27724288  T

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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 286253 - 286459
Alignment:
Q  23 tcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgaccattcttccctgct 122  Q
    ||||||| || ||||||||| |||||||||  || |||||||| || |||||| ||||| ||||||||||||||||||||||| ||| ||||||||| ||    
T  286253 tcctttagcatcaagctctttaatcatttgtatactcaaatcagacgagactagttcatcatcatcttttctgaagaatatatcacctttcttccctact 286352  T
Q  123 ccgattggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtag 222  Q
    || || ||||| |||||   ||||||| |||||||   ||||| || | |||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  286353 ccaataggacgctcaatataaggtaagagctcaactgtaaagattttatcccatgattccttcacaccaagctcacccaagattcttatgttaaaagtag 286452  T
Q  223 ttgtttc 229  Q
    |||||||    
T  286453 ttgtttc 286459  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 2741756 - 2741837
Alignment:
Q  23 tcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatata 104  Q
    |||||||| ||||| ||||||||||||| | ||| |||||||||| ||||||| ||||| ||||| |||| |||||||||||    
T  2741756 tcctttaataccaatctcttcaatcattcgagtactcaaatcaaatcagactagttcatgatcatgttttttgaagaatata 2741837  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 29124352 - 29124307
Alignment:
Q  25 ctttaacaccaagctcttcaatcatttgggtattcaaatcaaacca 70  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  29124352 ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaacca 29124307  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 32744734 - 32744779
Alignment:
Q  25 ctttaacaccaagctcttcaatcatttgggtattcaaatcaaacca 70  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  32744734 ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaacca 32744779  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 48741856 - 48742031
Alignment:
Q  24 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgaccatt-cttccctgct 122  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| ||  | | |||| ||||||| || |||||| ||||||| ||    
T  48741856 cctttaacaccaagctcctcaattatttgggtattcaaattaaaccagactagttcatcattttttcttctaaagaataaatcaccattacttccct-ct 48741954  T
Q  123 ccgattggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttcacaccaagttcacc 199  Q
    || || ||| ||||||||| |||||||||  ||| ||  |||| || |  ||| |||||||||||||| ||||||||    
T  48741955 ccaataggatgttcaatgctaggtaagggtccaaaaatgaagagtttagtccaagattccttcacaccgagttcacc 48742031  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 42450015 - 42449933
Alignment:
Q  18 ttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaa 100  Q
    |||| |||||||||||||||||  ||||||||||| ||  | ||||||| |||||||| ||| |||||| |||| ||||||||    
T  42450015 ttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatcacctttgctgaagaa 42449933  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 44186307 - 44186226
Alignment:
Q  24 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 105  Q
    ||||||||||| || ||||||||  |||| ||||| |||||||| ||  |||||||||| |||| |||| | ||||||||||    
T  44186307 cctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatat 44186226  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 2703855 - 2703740
Alignment:
Q  87 tcttttctgaagaatatatgaccattcttccctgctccgattggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttca 186  Q
    |||||||||||||||||||  || ||||||| |||||| || ||||  ||||||| ||  ||||| |||||| |||||| || || |||||||||||| |    
T  2703855 tcttttctgaagaatatattgcccttcttccatgctccaataggactatcaatgcaagacaagggttcaacatcaaagagtttaatccatgattccttga 2703756  T
Q  187 caccaagttcacccaa 202  Q
    ||||||||||||||||    
T  2703755 caccaagttcacccaa 2703740  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 5162500 - 5162445
Alignment:
Q  173 ccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgttt 228  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||| || ||||||    
T  5162500 ccatgattccttcacaccaacttcacccaaaattgatatgtgaaaaatatttgttt 5162445  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 42840388 - 42840586
Alignment:
Q  28 taacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgaccattcttccctgctccgat 127  Q
    |||||||||  ||||||||||||  |||| | |||||||||||  ||| |||||| || | |||| | |  |||||||  || |||||||||||||| ||    
T  42840388 taacaccaatttcttcaatcattccggtacttaaatcaaaccaagctagttcattgtctttttttataatcaatatattgcccttcttccctgctccaat 42840487  T
Q  128 tggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgt 226  Q
    ||||   |||| || |||||||||  |||||| |||||||| |  ||||||||| || ||||||||||||||||| |||   |||||||| ||||||||    
T  42840488 tggatactcaaggcaaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtagttgt 42840586  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 9764632 - 9764519
Alignment:
Q  89 ttttctgaagaatatatgaccattcttccctgctccgattggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttcaca 188  Q
    |||| ||||||||||||  ||||||||||| |||||||| ||| | ||||||| ||  ||||||||||||   |||| |  || |||||||||||| |||    
T  9764632 ttttatgaagaatatatttccattcttcccagctccgataggatgctcaatgcaagacaagggctcaacatagaagagtctaatccatgattccttgaca 9764533  T
Q  189 ccaagttcacccaa 202  Q
    ||||||||||||||    
T  9764532 ccaagttcacccaa 9764519  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 42262597 - 42262530
Alignment:
Q  18 ttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatc 85  Q
    |||| ||||| ||||||||||||||||||||| || || |||||||||| ||| ||||||| ||||||    
T  42262597 ttgtctccttcaacaccaagctcttcaatcatctgagttttcaaatcaacccaaactattttattatc 42262530  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 15807590 - 15807671
Alignment:
Q  24 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 105  Q
    |||||||||||||||||||| ||  | |||||  | ||||||||||| ||||  |||||||| | |||||||||||||||||    
T  15807590 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatat 15807671  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 16486625 - 16486672
Alignment:
Q  33 ccaagctcttcaatcatttgggtattcaaatcaaaccagactatttca 80  Q
    ||||| |||||||||||||||||||| ||||||||||| |||| ||||    
T  16486625 ccaagatcttcaatcatttgggtatttaaatcaaaccaaactagttca 16486672  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 28019342 - 28019143
Alignment:
Q  28 taacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgaccattcttccctgctccgat 127  Q
    |||||||||| || || |||||||||||||| || || |||||||||| | |    || |  ||| |||| || |||| ||| ||||| || ||||||||    
T  28019342 taacaccaaggtcctccatcatttgggtatttaagtcgaaccagactagtccgccgtctttctttttgaacaacatatcacccttctttcccgctccgat 28019243  T
Q  128 tggacgttcaatgccaggtaagggctcaacaacaaagacttcaacccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgtt 227  Q
    |||| | |||| || |||||| ||  | ||||| |||| || |  |||||||||||| |||| ||||||||||||||||   |||||||  |||||||||    
T  28019242 tggatgctcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattgaaatgtgaattgtagttgtt 28019143  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 40545165 - 40545118
Alignment:
Q  173 ccatgattccttcacaccaagttcacccaagattcttatgtgaaaagt 220  Q
    |||||||||||||||||||| ||||||||| |||  ||||||||||||    
T  40545165 ccatgattccttcacaccaacttcacccaaaattgatatgtgaaaagt 40545118  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 42637370 - 42637423
Alignment:
Q  173 ccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgt 226  Q
    ||||||||||||||| || | ||||||||| |||  ||||||||||||||||||    
T  42637370 ccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagttgt 42637423  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 368851 - 368797
Alignment:
Q  173 ccatgattccttcacaccaagttcacccaagattcttatgtgaaaagtagttgtt 227  Q
    |||||||||||||||||||| |||||| |  |||  |||||||||||||||||||    
T  368851 ccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagttgtt 368797  T

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