View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14467_low_8 (Length: 244)

Name: NF14467_low_8
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14467_low_8
NF14467_low_8
[»] chr3 (2 HSPs)
chr3 (52-226)||(11498757-11498931)
chr3 (1-57)||(11498995-11499051)
[»] chr2 (2 HSPs)
chr2 (130-168)||(24600602-24600640)
chr2 (130-168)||(24613474-24613512)
[»] chr1 (1 HSPs)
chr1 (56-117)||(38148441-38148503)
[»] chr6 (1 HSPs)
chr6 (56-116)||(25346056-25346117)
[»] chr8 (2 HSPs)
chr8 (130-166)||(27812521-27812557)
chr8 (56-117)||(39733022-39733086)
[»] chr5 (1 HSPs)
chr5 (130-166)||(2308201-2308237)
[»] chr4 (1 HSPs)
chr4 (130-165)||(54205091-54205126)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 11498931 - 11498757
Alignment:
Q  52 aaatcaacacctaagtgtgtataacaatgcatttacaaaaacacataaaagcgacaataaacatagtattgaatatatttgagcaatataatttccacat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11498931 aaatcaacacctaagtgtgtataacaatgcatttacaaaaacacataaaagcgacaataaacataatattgaatatatttgagcaatataatttccacat 11498832  T
Q  152 gctatgttattttaaatnnnnnnnntattatcttgactctaccttagtagttttttgagaaatgtcgtatcccgt 226  Q
    |||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11498831 gctatgttattttaaataaaaaaaatattatcttgactctatcttagtagttttttgagaaatgtcgtatcccgt 11498757  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11499051 - 11498995
Alignment:
Q  1 gtaagatcacagttccttcttaactgacaagtacacataacaaaaaatcataaatca 57  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  11499051 gtaagatcacagttccttcctaactgacaactacacataacaaaaaatcataaatca 11498995  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 24600602 - 24600640
Alignment:
Q  130 ttgagcaatataatttccacatgctatgttattttaaat 168  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24600602 ttgagcaatataatttcctcatgctatgttattttaaat 24600640  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 24613512 - 24613474
Alignment:
Q  130 ttgagcaatataatttccacatgctatgttattttaaat 168  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24613512 ttgagcaatataatttcctcatgctatgttattttaaat 24613474  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 38148441 - 38148503
Alignment:
Q  56 caacacctaagtgtgtataacaatgcatttacaaa-aacacataaaagcgacaataaacatag 117  Q
    ||||||| | |||||||| |||||||||||||||| | |||||||||||||||| ||||||||    
T  38148441 caacaccaacgtgtgtatgacaatgcatttacaaatatcacataaaagcgacaacaaacatag 38148503  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 25346117 - 25346056
Alignment:
Q  56 caacacctaagtgtgtataacaatgcatttacaaa-aacacataaaagcgacaataaacata 116  Q
    ||||||| | |||||||| |||||||||||||||| | |||||||||||||||| |||||||    
T  25346117 caacaccaacgtgtgtatgacaatgcatttacaaatatcacataaaagcgacaacaaacata 25346056  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 27812521 - 27812557
Alignment:
Q  130 ttgagcaatataatttccacatgctatgttattttaa 166  Q
    |||||||||||||||||| ||||||||||||||||||    
T  27812521 ttgagcaatataatttcctcatgctatgttattttaa 27812557  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 39733022 - 39733086
Alignment:
Q  56 caacacctaagtgtgtata--acaatgcatttacaaaaa-cacataaaagcgacaataaacatag 117  Q
    ||||||| | |||||||||  |||||||||||||||| | |||||||||||||||| ||||||||    
T  39733022 caacaccaacgtgtgtatatgacaatgcatttacaaatatcacataaaagcgacaacaaacatag 39733086  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 2308201 - 2308237
Alignment:
Q  130 ttgagcaatataatttccacatgctatgttattttaa 166  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2308201 ttgagcaatataatttcctcatgctatgttattttaa 2308237  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 54205126 - 54205091
Alignment:
Q  130 ttgagcaatataatttccacatgctatgttatttta 165  Q
    |||||||||||||||||| |||||||||||||||||    
T  54205126 ttgagcaatataatttcctcatgctatgttatttta 54205091  T

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