View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14467_low_9 (Length: 235)
Name: NF14467_low_9
Description: NF14467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14467_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 1445869 - 1445671
Alignment:
| Q |
20 |
tcactaagccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagcaacatatattctgaacaattcatcag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1445869 |
tcactaagccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagcaacatatattctgaacaattcatcag |
1445770 |
T |
|
| Q |
120 |
ttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttatgcaacatgtaaattttcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1445769 |
ttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttctgcaacatgtaaattttcat |
1445671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 12105575 - 12105712
Alignment:
| Q |
80 |
cacactatgttagcaacatatattctgaacaattcatcagttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaa |
179 |
Q |
| |
|
|||| ||||||||||| || ||||||||| |||||| |||||||||||| ||||||||| ||||||||| | |||| ||||| ||||||||| | ||| |
|
|
| T |
12105575 |
cacattatgttagcaaaatttattctgaagaattcaacagttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaa |
12105674 |
T |
|
| Q |
180 |
cctcatgttcaagggcttatgcaacatgtaaattttca |
217 |
Q |
| |
|
|||| |||||||| |||| |||||||||| || ||||| |
|
|
| T |
12105675 |
cctcgtgttcaagagcttctgcaacatgtcaactttca |
12105712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 1459112 - 1459054
Alignment:
| Q |
78 |
agcacactatgttagcaacatatattctgaacaattcatcagttttagaaactatgtca |
136 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
1459112 |
agcacattttgttagcaagatatattctgaacaactcagcagttttagaaactatgtca |
1459054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 45810256 - 45810124
Alignment:
| Q |
85 |
tatgttagcaacatatattctgaacaattcatcagttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctca |
184 |
Q |
| |
|
||||||||||| | ||||||||| ||| || |||||||||||||||| ||||||||||| ||||||||| ||| | ||||||| | | || | ||| |
|
|
| T |
45810256 |
tatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttca |
45810157 |
T |
|
| Q |
185 |
tgttcaagggcttatgcaacatgtaaattttca |
217 |
Q |
| |
|
||| ||||||||| ||||| |||| || ||||| |
|
|
| T |
45810156 |
tgtccaagggcttctgcaaaatgtcaactttca |
45810124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 10116490 - 10116391
Alignment:
| Q |
118 |
agttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttatgcaacatgtaaattttca |
217 |
Q |
| |
|
||||||||||||||||||||| ||||| | | | ||||| ||| | |||||||||| || |||||||| ||||||||| | ||||||||||| ||||| |
|
|
| T |
10116490 |
agttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
10116391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 965276 - 965158
Alignment:
| Q |
28 |
ccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagcaacatatattctgaacaattcatcagttttagaa |
127 |
Q |
| |
|
||||| ||| ||| ||||| ||||||||| || |||||| | |||| | | |||| |||| |||||| || ||||||| | ||| || |||||||||| |
|
|
| T |
965276 |
ccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaa |
965177 |
T |
|
| Q |
128 |
actatgtcaatttggtgct |
146 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
965176 |
actatgtcaatgtggtgct |
965158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University