View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_high_15 (Length: 379)
Name: NF14468_high_15
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 53831039 - 53831311
Alignment:
| Q |
11 |
cacagattattgtttgagccattaaactacttcctcggtctcnnnnnnnttattatgagaaggaagtacagtacatgcgaaatgaaatcaattttgttga |
110 |
Q |
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| T |
53831039 |
cacagattattgtttgagccattaaactacttcctcggtctcaaaaaaattattatgagaaggaagtacagtacatgcgaaatgaaatcaattttgttga |
53831138 |
T |
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| Q |
111 |
agaatggggtttacaaatttcttcaatgggaggggcattccattggccagtgatattttttcaactgaacaaaatcacgaacgcaatcgtcaaatttcaa |
210 |
Q |
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| T |
53831139 |
agaatggggtttacaaatttcttcaatgggaggggcattccattggccagtgatattttttcaactgaacaaaatcacgaacgcaatcgtcaaatttcaa |
53831238 |
T |
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| Q |
211 |
agattgatttgcttcctagcattagcaaatttctctccagcaactctatcaaaaatcttcttccaaccatctt |
283 |
Q |
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| T |
53831239 |
agattgatttgcttcctagcattagcaaatttctctccagcaactctatcaaaaatcttctcccaaccatctt |
53831311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 95 - 283
Target Start/End: Original strand, 53839033 - 53839220
Alignment:
| Q |
95 |
aaatcaattttgttgaagaatggggtttacaaatttcttcaatgggaggggcattccattggccagtgatattttttcaactgaacaaaatcacgaacgc |
194 |
Q |
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| T |
53839033 |
aaatcaattttgttcaagaa-gaggtttacaaatttcttgaatgggaggggcattccactgagcagtaatattttt-caactgaacgaaatcattaacac |
53839130 |
T |
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| Q |
195 |
aatcgtcaaatttcaaagattga-tttgcttcctagcattagcaaatttctctccagcaactctatcaaaaatcttcttccaaccatctt |
283 |
Q |
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| T |
53839131 |
aatcatcaaatttcaaagagtgaatttgcttcctagcattagcaaatttctttccagcaactttatcaaaaatcttctcccaaccatctt |
53839220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Original strand, 53838170 - 53838198
Alignment:
| Q |
335 |
cattagcatccaaacattcacgacaataa |
363 |
Q |
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| T |
53838170 |
cattagcatccaaacattcacgacaataa |
53838198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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