View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_high_18 (Length: 371)
Name: NF14468_high_18
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 35766976 - 35766635
Alignment:
| Q |
14 |
aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766976 |
aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat |
35766877 |
T |
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| Q |
114 |
cacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggctaaccaatttagacaaccattcagatacgca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
35766876 |
cacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggccaaccaatttagacaaccattcagatacaca |
35766777 |
T |
|
| Q |
214 |
ccatcattcacaccatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766776 |
ccatcattcacaccatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacat |
35766677 |
T |
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| Q |
314 |
cagttctatcttcagcttcattaaaaaataactgcactacct |
355 |
Q |
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| T |
35766676 |
cagttctatcttcagcttcattaaaaaataactgcactacct |
35766635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 36260211 - 36260088
Alignment:
| Q |
14 |
aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat |
113 |
Q |
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||||||| || | |||| ||||||| |||| ||||||||||||| | |||||||||||||| |||||| ||||| |||| |||| ||||| |||||||| |
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| T |
36260211 |
aatatacataccgatggctcaataggtgacatttcatcaaaaccgcaaggaggcatcaactttgtgtatgtctc--tgtttccagatcaagtgaaacaat |
36260114 |
T |
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| Q |
114 |
cacaaattctctaatatccattttct |
139 |
Q |
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| T |
36260113 |
cacaaattttttaacattcattttct |
36260088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 46769088 - 46769018
Alignment:
| Q |
257 |
caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttca |
327 |
Q |
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| T |
46769088 |
caggaaaactttgaatagttctccaaatattatcacccacactcaaaacttgcacatgagttctattttca |
46769018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 36255293 - 36255221
Alignment:
| Q |
45 |
tttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaa |
119 |
Q |
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||||||||||||| | |||||||||| ||| ||||| |||||| |||||||| ||||||| |||||||||||| |
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| T |
36255293 |
tttcatcaaaaccacgcggaggcatcagctgcgtgtatgtctct--gttcccagatcaagcgcaacaatcacaaa |
36255221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 18953261 - 18953299
Alignment:
| Q |
251 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
289 |
Q |
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| T |
18953261 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18953299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 18983308 - 18983346
Alignment:
| Q |
251 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
289 |
Q |
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| T |
18983308 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18983346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 18997954 - 18997992
Alignment:
| Q |
251 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
289 |
Q |
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| T |
18997954 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18997992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 20495586 - 20495533
Alignment:
| Q |
175 |
cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacacca |
228 |
Q |
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||||| || |||||||| |||| |||||||| |||| ||||||||||||||||| |
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| T |
20495586 |
cgaagagccaaccaattcagactaccattcaaatacacaccatcattcacacca |
20495533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 30398820 - 30398771
Alignment:
| Q |
278 |
tccaaacattattacccaaacttaaaacttgcacatcagttctatcttca |
327 |
Q |
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|||||||||||||| ||| |||||||||| |||||| |||||||| |||| |
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| T |
30398820 |
tccaaacattattagccacacttaaaactcgcacatgagttctattttca |
30398771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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