View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14468_high_2 (Length: 617)

Name: NF14468_high_2
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14468_high_2
NF14468_high_2
[»] chr2 (17 HSPs)
chr2 (292-442)||(28171239-28171389)
chr2 (20-147)||(28156746-28156873)
chr2 (150-275)||(28171381-28171506)
chr2 (157-268)||(28174594-28174706)
chr2 (159-265)||(28214379-28214485)
chr2 (151-263)||(28182989-28183102)
chr2 (27-113)||(28164007-28164091)
chr2 (159-265)||(28221799-28221905)
chr2 (160-265)||(32310351-32310456)
chr2 (160-265)||(32564364-32564469)
chr2 (160-253)||(32786819-32786912)
chr2 (160-265)||(32814027-32814132)
chr2 (101-147)||(28163873-28163919)
chr2 (457-498)||(28171004-28171045)
chr2 (169-268)||(32306215-32306314)
chr2 (355-435)||(28161449-28161529)
chr2 (459-498)||(28152857-28152896)
[»] chr3 (4 HSPs)
chr3 (508-600)||(1614715-1614807)
chr3 (512-547)||(8836518-8836553)
chr3 (512-547)||(55310453-55310488)
chr3 (530-594)||(1609559-1609623)
[»] chr5 (1 HSPs)
chr5 (512-547)||(26472421-26472456)
[»] scaffold0320 (1 HSPs)
scaffold0320 (41-83)||(18949-18991)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 7e-63; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 292 - 442
Target Start/End: Complemental strand, 28171389 - 28171239
Alignment:
Q  292 cattagtcatattcaaggtctggttgcatcatgctttttgatgtctctgtgtctgcaattgtgaaggtcgcagtgcgtctgtgttttaacattttgtcgt 391  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28171389 cattagtcatattcaaggtctggttgcatcatgttttttgatgtctttgtgtctgcaattgtacaggtcgcagtgcgtctgtgttttaacattttgtcgt 28171290  T
Q  392 atcatattcatgcctaagatcgaaaaccaatgcaaatgggagaaaagttat 442  Q
    || ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  28171289 attatattcatgactaagatcgataaccaatgcaaatgggagaaaagttat 28171239  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 28156873 - 28156746
Alignment:
Q  20 taagggtcatatgtgtgcatcaatacatgttttgtgatttcatttggtttatatctattgaactagttctctatttcggatcacatggggcattgtgttg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  28156873 taagggtcatatgtgtgcatcaatacatgttttgtgatttcatttggtttatatctattgaactagttctctatttcggatcacatggggcattgctttg 28156774  T
Q  120 aaacagttgtgcaaatatgaaagtttat 147  Q
    | ||||||||||||||||||||||||||    
T  28156773 acacagttgtgcaaatatgaaagtttat 28156746  T

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Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 150 - 275
Target Start/End: Complemental strand, 28171506 - 28171381
Alignment:
Q  150 ttgatgttcttgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcc 249  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  28171506 ttgatattcttgttgtcttgacagttttgcctcatcttactaagcaaatcaagaagtatactcaggtctggttgcgctgttccttgaaagatgtacagtc 28171407  T
Q  250 tttgtcgaatgaaatcacattagtca 275  Q
    || |||||||||||||||||||||||    
T  28171406 ttcgtcgaatgaaatcacattagtca 28171381  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 28174706 - 28174594
Alignment:
Q  157 tcttgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatact-caggtctggttgcgctgttccttgaaagatgtacagcctttgtc 255  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||  |||||  ||||||||||||||||||||||| |||| ||||||| |||||||    
T  28174706 tcttgttgtctggacagtttagcctcatctgactaagaaaatcaagagctatacgacaggtctggttgcgctgttcctttaaagttgtacagactttgtc 28174607  T
Q  256 gaatgaaatcaca 268  Q
     ||| ||||||||    
T  28174606 aaatcaaatcaca 28174594  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 28214379 - 28214485
Alignment:
Q  159 ttgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttgtcgaa 258  Q
    ||||||||  ||||||||||||||||||||||||| ||||| |||  ||||||| ||||||||||| ||||||||||||||  ||||||||||||  |||    
T  28214379 ttgttgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaa 28214478  T
Q  259 tgaaatc 265  Q
    |||||||    
T  28214479 tgaaatc 28214485  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 28183102 - 28182989
Alignment:
Q  151 tgatgttcttgttgtcttgacagttttgcctcatctgactaagcaaatcaagaa--atatactcaggtctggttgcgctgttccttgaaagatgtacagc 248  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  |||||||||| || ||||||  ||||||||||| | |||| | |    
T  28183102 tgatattcttgttgtctggacagttttgcctcatctgactaaggaaatcaagaagtatatactcagatccggttgccttgttccttgaatg-tgtaaatc 28183004  T
Q  249 ctttgtcgaatgaaa 263  Q
    |||||||||||||||    
T  28183003 ctttgtcgaatgaaa 28182989  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 28164091 - 28164007
Alignment:
Q  27 catatgtgtgcatcaatacatgttttgtgatttcatttggtttatatctattgaactagttctctatttcggatcacatggggcatt 113  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||  || |||||||||||| ||||||||||||||||| |||||    
T  28164091 catatgtgtgcatcaatacatgtattgtgattttatttgctttata--tactgaactagttctatatttcggatcacatggtgcatt 28164007  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 28221905 - 28221799
Alignment:
Q  159 ttgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttgtcgaa 258  Q
    ||||||||  |||||||||||||||||||||| || ||||| |||  ||||||| ||||||||||| ||||||||||||||  ||| ||||||||  |||    
T  28221905 ttgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtagagcctttgctgaa 28221806  T
Q  259 tgaaatc 265  Q
    |||||||    
T  28221805 tgaaatc 28221799  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 32310456 - 32310351
Alignment:
Q  160 tgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttgtcgaat 259  Q
    |||||||  |||||||| ||||||||||||| || ||||| |||  ||||||| | ||||||||| ||||||||||||||  ||||||||||||  ||||    
T  32310456 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacagcctttgctgaat 32310357  T
Q  260 gaaatc 265  Q
    ||||||    
T  32310356 gaaatc 32310351  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 32564364 - 32564469
Alignment:
Q  160 tgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttgtcgaat 259  Q
    |||||||  |||||||| ||||||||||||| || ||||| |||  ||||||| | ||||||||| ||||||||||||||  ||||| ||||||  ||||    
T  32564364 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaat 32564463  T
Q  260 gaaatc 265  Q
    ||||||    
T  32564464 gaaatc 32564469  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 32786819 - 32786912
Alignment:
Q  160 tgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttg 253  Q
    |||||||  |||||||| ||||||||||||| || ||||| |||  ||||||  ||||||||||| ||||||||||||||  ||||||||||||    
T  32786819 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttg 32786912  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 32814027 - 32814132
Alignment:
Q  160 tgttgtcttgacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttgtcgaat 259  Q
    |||||||  |||||||| ||||||||||||| || ||||| |||  ||||||| | ||||||||| ||||||||||||||  ||||| ||||||  ||||    
T  32814027 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaat 32814126  T
Q  260 gaaatc 265  Q
    ||||||    
T  32814127 gaaatc 32814132  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 28163919 - 28163873
Alignment:
Q  101 cacatggggcattgtgttgaaacagttgtgcaaatatgaaagtttat 147  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  28163919 cacatggggcattgttttgaaacagttgtgcatatatgaaagtttat 28163873  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 28171045 - 28171004
Alignment:
Q  457 agagtgagtacagtcttcaaaataataagataagtcccacat 498  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  28171045 agagtgagtacactcttcaaaataataagataagtcccacat 28171004  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 32306314 - 32306215
Alignment:
Q  169 gacagttttgcctcatctgactaagcaaatcaagaaatatactcaggtctggttgcgctgttccttgaaagatgtacagcctttgtcgaatgaaatcaca 268  Q
    |||||||| | |||||| |||| |  ||||| |||  ||||||| ||||||||||| ||||||||||||||  ||||| ||||||  |||||||||||||    
T  32306314 gacagtttagtctcatcagactgaaaaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaatcaca 32306215  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 28161529 - 28161449
Alignment:
Q  355 aaggtcgcagtgcgtctgtgttttaacattttgtcgtatcatattcatgcctaagatcgaaaaccaatgcaaatgggagaa 435  Q
    |||||||||| |||| || ||||||||| ||| || ||| ||| |||||  |||||| |||||||||| ||||||||||||    
T  28161529 aaggtcgcagcgcgtttgcgttttaacaatttatcatattatagtcatgattaagattgaaaaccaatacaaatgggagaa 28161449  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 28152896 - 28152857
Alignment:
Q  459 agtgagtacagtcttcaaaataataagataagtcccacat 498  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  28152896 agtgagtacactcttcaaaataataagagaagtcccacat 28152857  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 600
Target Start/End: Complemental strand, 1614807 - 1614715
Alignment:
Q  508 agattctagagcaagaaaatctattttcttgggttacaagcaaaatgtcaaaggtgttgtccttcttgatttaaacaataaaaccatcttcat 600  Q
    |||||||||||| |  ||||  |||||||||||||| ||||||| ||||||||||| | | ||||||||||||||||  |||||||| |||||    
T  1614807 agattctagagctaagaaatgcattttcttgggttataagcaaagtgtcaaaggtgctattcttcttgatttaaacaccaaaaccattttcat 1614715  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 547
Target Start/End: Original strand, 8836518 - 8836553
Alignment:
Q  512 tctagagcaagaaaatctattttcttgggttacaag 547  Q
    |||||||||||||||||| |||||||||||||||||    
T  8836518 tctagagcaagaaaatctgttttcttgggttacaag 8836553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 547
Target Start/End: Original strand, 55310453 - 55310488
Alignment:
Q  512 tctagagcaagaaaatctattttcttgggttacaag 547  Q
    |||||||||||||||||| |||||||||||||||||    
T  55310453 tctagagcaagaaaatctgttttcttgggttacaag 55310488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 594
Target Start/End: Complemental strand, 1609623 - 1609559
Alignment:
Q  530 attttcttgggttacaagcaaaatgtcaaaggtgttgtccttcttgatttaaacaataaaaccat 594  Q
    |||||||||||||| ||||||| ||||||| ||  | | ||||||||||||||||  ||||||||    
T  1609623 attttcttgggttataagcaaagtgtcaaacgtactatacttcttgatttaaacaccaaaaccat 1609559  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 547
Target Start/End: Original strand, 26472421 - 26472456
Alignment:
Q  512 tctagagcaagaaaatctattttcttgggttacaag 547  Q
    |||||||||||||||||| |||||||||||||||||    
T  26472421 tctagagcaagaaaatctgttttcttgggttacaag 26472456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 18991 - 18949
Alignment:
Q  41 aatacatgttttgtgatttcatttggtttatatctattgaact 83  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||    
T  18991 aatacatgttttgtggtttcatttggttcatatccattgaact 18949  T

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