View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_high_21 (Length: 350)
Name: NF14468_high_21
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 47242157 - 47242480
Alignment:
| Q |
16 |
aggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggctt |
115 |
Q |
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| T |
47242157 |
aggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggctt |
47242256 |
T |
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| Q |
116 |
atatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgac |
215 |
Q |
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| T |
47242257 |
atatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgac |
47242356 |
T |
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| Q |
216 |
atcaccagctagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaatgaatcacagcaagtgcaaataaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
47242357 |
atcaccagctagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatgaatcacagcaagtgaaaataaa |
47242456 |
T |
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| Q |
316 |
cataattagtccaattaacttcat |
339 |
Q |
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|| ||||||||||||||||||||| |
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| T |
47242457 |
cagaattagtccaattaacttcat |
47242480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 47248602 - 47248877
Alignment:
| Q |
16 |
aggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggctt |
115 |
Q |
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||||||| |||||||||||| ||||||||| |||||||| ||||| || |||||||||| ||||||| ||| ||| |||| |||||||||| || |||| |
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| T |
47248602 |
aggatgtgctccaggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgtacactcatagtccaacaagctt |
47248701 |
T |
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| Q |
116 |
atatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgac |
215 |
Q |
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| || |||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| | || ||||||| |
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| T |
47248702 |
aagtcagcaagatagctgcacaggaattcaaactgcaaattggaattctgcaattaaaacaaacaa---acaattagtaaacacaacacaagcttttgac |
47248798 |
T |
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| Q |
216 |
atcaccagc---tagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaa |
291 |
Q |
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|||| || | |||||||||||||| | ||||| | |||||| |||||||| |||||||||||| ||| |||||||| |
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| T |
47248799 |
atcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaa |
47248877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 47253417 - 47253569
Alignment:
| Q |
16 |
aggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggctt |
115 |
Q |
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||||||||||||||| | || || |||||||||||||| |||||||| |||||||| || ||||||| ||||||||||||||||||||| | || |||| |
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| T |
47253417 |
aggatgtactccaggacagattatgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcatagtctatcaagctt |
47253516 |
T |
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| Q |
116 |
atatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaa |
168 |
Q |
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| || |||||||| || |||||| |||| | || || || ||||||||||| |
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| T |
47253517 |
agctcagcaagatagttacacagaaattccatttgtaattttgaagtctgaaa |
47253569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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