View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_high_23 (Length: 325)
Name: NF14468_high_23
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 2169083 - 2168789
Alignment:
| Q |
19 |
gacatgactttgtttattatttaacaggtttaatgaactgttgatacacatgctcaaaatctatccctgacgcaaattcaatccatcaaacctactactc |
118 |
Q |
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| T |
2169083 |
gacatgactt-gtttattatttaacaggtttaatgaactgttgatacacatgctcaaaatctatccctgacgcgaattcaatccaccaaacctactactc |
2168985 |
T |
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| Q |
119 |
ttcttgtccttgtctgagtctctgccttaagtt-aaaatgttcgttggcatttttaacctttgtgttgggtttgggaacagtcagagaatacagagtcaa |
217 |
Q |
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|| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
2168984 |
tt---gtccttgtctgagtctctaccttaagtttaaaatgttcgttgacatttttaacctttgtgttgggtttgggaacagtccgagaatacatagtcaa |
2168888 |
T |
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| Q |
218 |
tagacagatcgtaaccatagatttgttaaatgttaccccacgttaaaataatagaaatcatttttggacatcaaaactttgacaaacactgtttttcat |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2168887 |
tagacagatcgtaatcatagatttgttaaatgttaccccacgttaaaataatataaatcatttttggacatcaaaactttgacaaacactgtttttcat |
2168789 |
T |
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