View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_high_29 (Length: 270)
Name: NF14468_high_29
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 38087194 - 38087426
Alignment:
| Q |
19 |
aaaatctcaaattatttatacataatgcaattgttagtccaacatatgactggcacactattaaccgtagcgtaactaacaaaacagaaacttaaaaccg |
118 |
Q |
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| T |
38087194 |
aaaatctcaaattattcatacataatgcaattgttagtccaacatatgactggcacactattaactatagcataactaacaaaacggaaacttaaaaccg |
38087293 |
T |
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| Q |
119 |
tttt-ctaatcaactaacttacatatgataaatctaacatgtgtctttacataacaaaatgaacttagttttggtatttcatttgagctaccaaattttg |
217 |
Q |
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| T |
38087294 |
tttttctaatcaactaacttacatatgataaatctaacatgtgtctttacataacaaaatgaacttagttttggtatttcatttgagctaccaaaatttg |
38087393 |
T |
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| Q |
218 |
acaagtgttaaagggtgtagtgcatgcatggca |
250 |
Q |
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| T |
38087394 |
acaagtgttaaagggtgtagtgcatgcatggca |
38087426 |
T |
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Back To:
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 7335774 - 7335832
Alignment:
| Q |
147 |
aaatctaacatgtgtctttacataacaaaatgaacttagttttggtatttcatttgagct |
206 |
Q |
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| T |
7335774 |
aaatctaacatgtgcctttatataataaaatgaactt-gttttggtatttcatttgagct |
7335832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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