View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_high_32 (Length: 263)
Name: NF14468_high_32
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2032161 - 2032381
Alignment:
| Q |
1 |
ttagatccgtaattaataaaatttaatnnnnnnnnncttatacaaaagtctaatacttttaaaggaaaatacattaataattcaacattaattaattata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2032161 |
ttagatccgtaattaataaaatttaataaaaaaaaacttatacaaaagtctaatacttttaaaggaaaatacattaataattcaacattaatt---tata |
2032257 |
T |
|
| Q |
101 |
acctctacttagaaaaagatatttgtgattaaaataaaaattgtatttgtgctagtaatcttatcgtgtgagttaattc-ttttttgtaataatctctat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
2032258 |
acctctacttagaaaaagatatttgtgattaaaataaaaattttatttgtgctagtaatcttatcgtgtaagttaattctttttttgtaataatctctat |
2032357 |
T |
|
| Q |
200 |
taatttcataaatgattaaactcc |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2032358 |
taatttcataaatgattaaactcc |
2032381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University