View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_high_39 (Length: 223)
Name: NF14468_high_39
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 14337680 - 14337635
Alignment:
| Q |
122 |
caatatgctttctttaaaacataatgagaacttaaatatatggttt |
167 |
Q |
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| T |
14337680 |
caatatgctttctttaaaaaataatgagaacttaaatatatggttt |
14337635 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 14337784 - 14337744
Alignment:
| Q |
19 |
cataggaccaaaataaaataaagattatgtagcaatagcat |
59 |
Q |
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| T |
14337784 |
cataggaccaaaataaaataaagattatgtagcaatagcat |
14337744 |
T |
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