View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14468_high_4 (Length: 529)

Name: NF14468_high_4
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14468_high_4
NF14468_high_4
[»] chr2 (6 HSPs)
chr2 (17-348)||(587488-587834)
chr2 (413-460)||(1777470-1777517)
chr2 (411-457)||(588547-588593)
chr2 (47-84)||(25978863-25978901)
chr2 (399-460)||(29794314-29794374)
chr2 (420-460)||(2412446-2412486)
[»] chr3 (14 HSPs)
chr3 (17-348)||(46026868-46027217)
chr3 (226-344)||(45267582-45267703)
chr3 (407-460)||(44507804-44507857)
chr3 (376-460)||(46027391-46027475)
chr3 (420-460)||(40477392-40477432)
chr3 (414-460)||(46104344-46104390)
chr3 (413-458)||(22508738-22508783)
chr3 (413-461)||(40476221-40476269)
chr3 (420-463)||(20489376-20489419)
chr3 (413-460)||(46026077-46026124)
chr3 (413-459)||(39819314-39819360)
chr3 (420-460)||(39820622-39820662)
chr3 (420-460)||(52708635-52708675)
chr3 (420-460)||(53121303-53121343)
[»] chr5 (7 HSPs)
chr5 (411-460)||(34911837-34911886)
chr5 (411-460)||(27571138-27571187)
chr5 (411-460)||(35604420-35604469)
chr5 (420-460)||(3936579-3936619)
chr5 (411-459)||(25254140-25254188)
chr5 (411-459)||(25317930-25317978)
chr5 (420-460)||(31540497-31540537)
[»] chr4 (7 HSPs)
chr4 (399-460)||(19675617-19675678)
chr4 (413-460)||(42359357-42359404)
chr4 (420-458)||(41935088-41935126)
chr4 (399-460)||(30091052-30091113)
chr4 (22-67)||(55866648-55866693)
chr4 (420-460)||(22204056-22204096)
chr4 (420-460)||(41933819-41933859)
[»] scaffold0765 (1 HSPs)
scaffold0765 (386-458)||(1863-1935)
[»] scaffold0009 (1 HSPs)
scaffold0009 (413-460)||(202580-202627)
[»] chr7 (10 HSPs)
chr7 (413-458)||(11217082-11217127)
chr7 (413-458)||(12385718-12385763)
chr7 (420-460)||(5611525-5611565)
chr7 (420-460)||(31489953-31489993)
chr7 (413-460)||(12933420-12933467)
chr7 (413-456)||(25037755-25037798)
chr7 (399-460)||(24197100-24197161)
chr7 (22-67)||(43123713-43123758)
chr7 (420-460)||(24195608-24195648)
chr7 (420-460)||(35212069-35212109)
[»] chr1 (5 HSPs)
chr1 (413-458)||(9774040-9774085)
chr1 (420-460)||(27264234-27264274)
chr1 (420-460)||(9774906-9774946)
chr1 (420-460)||(27262909-27262949)
chr1 (420-460)||(35721102-35721142)
[»] scaffold0001 (1 HSPs)
scaffold0001 (420-460)||(121003-121043)
[»] chr8 (9 HSPs)
chr8 (386-462)||(28996833-28996909)
chr8 (413-459)||(3483635-3483681)
chr8 (47-84)||(4183031-4183069)
chr8 (399-460)||(1420439-1420500)
chr8 (399-460)||(10292817-10292878)
chr8 (420-460)||(10717122-10717162)
chr8 (420-460)||(10718466-10718506)
chr8 (420-460)||(28998011-28998051)
chr8 (420-460)||(36588223-36588263)
[»] scaffold0106 (1 HSPs)
scaffold0106 (413-460)||(29730-29777)
[»] chr6 (4 HSPs)
chr6 (399-458)||(3279496-3279555)
chr6 (47-84)||(16999306-16999344)
chr6 (420-460)||(18810533-18810573)
chr6 (420-460)||(21165247-21165287)
[»] scaffold0230 (1 HSPs)
scaffold0230 (420-460)||(449-489)
[»] scaffold0002 (2 HSPs)
scaffold0002 (420-460)||(374336-374376)
scaffold0002 (420-460)||(376387-376427)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 587834 - 587488
Alignment:
Q  17 acgatttttgttcaacaatattttcatggatttggtgatgaagatggatttgaatgaatatttttgttcaacaaacttctcatctgtaattctgaaca-- 114  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  587834 acgatttttgttcaacaatgttttcatgaatttggtgatgaagatggatttgaatgaatatttttgttcaacaaacttctcatctgtaattctgaacacg 587735  T
Q  115 ----------------agactaggaacttgctcttgagtgaactttatgttgctactgttaaaattaaattttttgtgttatttccagatttgtgaaaga 198  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  587734 aatttgatgttagtgaagactaggaacttgctcttgagtgaactttatgttgctactgttaaaattaaattttttgtgttatttccagatttgggaaaga 587635  T
Q  199 gaggaatagggtggttacaaatctgagaggagtaaagatgaacactttatgtggagaaaagataaggagagatctatgaaatcaacaaattaattagcag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||       
T  587634 gaggaatagggtggttacaaatctgagaggagtaaagatgaacac-ttatgtggagaaaagataaggagagatctatgaaaccaacaaattaattag--t 587538  T
Q  299 atatgaaggagagattccttccaaaattaaatgttttgttgttaatttca 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  587537 atatgaaggagagattccttccaaaattaaatgttttgttgttaatttca 587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 1777517 - 1777470
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||| ||||||||| |||||||||||||||| ||| |||||||||||    
T  1777517 caaaactcaaactcgctatatttgcagggaccaaaaacatattttagc 1777470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 588547 - 588593
Alignment:
Q  411 atcaaaattcaaactcgttatatttgcagggacctaaatcatatttt 457  Q
    ||||||| |||||||||||||||||||||||||  ||| ||||||||    
T  588547 atcaaaactcaaactcgttatatttgcagggacaaaaaacatatttt 588593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 25978863 - 25978901
Alignment:
Q  47 tttggtgatgaagatggatttgaatgaat-atttttgtt 84  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  25978863 tttggtgatgaagatggatttgaatgaatgatttttgtt 25978901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 29794314 - 29794374
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||| ||| ||||| ||||| ||| |||||||||||||||| ||| |||||||||||    
T  29794314 tttttatcaggaaccaaaactcaaattcgctatatttgcagggacc-aaaacatattttagc 29794374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 2412446 - 2412486
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  2412446 caaactcgctatatttgcagggaccaaaaacatattttagc 2412486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 46026868 - 46027217
Alignment:
Q  17 acgatttttgttcaacaatattttcatggatttggtgatgaagatggatttgaatgaatatttttgttcaacaaacttctcatctgtaattctgaaca-- 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||      
T  46026868 acgatttttgttcaacaatgttttcatggatttggtgatgaagatggatttgaatgaatattgttgttcaacaaacttctcatttgtaattttgaacatg 46026967  T
Q  115 ----------------agactaggaacttgctcttgagtgaactttatgttgctactgttaaaattaaattttttgtgttatttccagatttgtgaaaga 198  Q
                    ||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46026968 aatttgatgttagtgaagaatagggacttgctgttgagtgaactttacgttgctactgttaaaattaaattttttgtgttatttccagatttgggaaaga 46027067  T
Q  199 gaggaatagggtggttacaaatctgagaggagtaaagatgaacactttatgtggagaaaagataaggagagatctatgaaatcaacaaattaattagcag 298  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46027068 gaggaatagggtggttacaaatatgagaggagtaaagatgaacactttatgtggagaaaagataaggagagatctatgaaatcaacaaattaattagcaa 46027167  T
Q  299 atatgaaggagagattccttccaaaattaaatgttttgttgttaatttca 348  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  46027168 atatgaaggagagattccttcaaaaattaaatgttttgctgttaatttca 46027217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 344
Target Start/End: Complemental strand, 45267703 - 45267582
Alignment:
Q  226 aggagtaaagatgaacactttatgtggagaaaagataa-ggagagatct-atgaaatcaacaaattaattagcagatatgaaggagagattccttc-caa 322  Q
    ||||| ||||||||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||  ||    
T  45267703 aggagaaaagatgaacactttgtgtggagaaaagatgatggagagatctgatgaaatcaacaaattaattaacagatatgaaggagagattctttcaaaa 45267604  T
Q  323 aattaaatgttttgttgttaat 344  Q
    || |||||||||| || |||||    
T  45267603 aaataaatgttttatttttaat 45267582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 44507804 - 44507857
Alignment:
Q  407 atgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  44507804 atgaaccaaaattcaaactcgctatatttgcagggaccaaaatcatattttagc 44507857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 460
Target Start/End: Original strand, 46027391 - 46027475
Alignment:
Q  376 gcaatgaccgatttcgaaacttgtttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||| |||||||||| |||||| |||||| || | | ||||||||||||||| |||||||||||||||| |||  ||||||||||    
T  46027391 gcaaggaccgatttcaaaacttttttttaccagggaccaaaattcaaactcgctatatttgcagggaccaaaagtatattttagc 46027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 40477392 - 40477432
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  40477392 caaactcgttatatttgcagggaccaaaatcatattttagc 40477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 46104390 - 46104344
Alignment:
Q  414 aaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||    
T  46104390 aaaactcaaactcgctatatttgcagggaccaaaatcatattttagc 46104344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 22508783 - 22508738
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatatttta 458  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||    
T  22508783 caaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 40476269 - 40476221
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagca 461  Q
    |||||| |||||||| |||||||||||||||| ||| ||||||||||||    
T  40476269 caaaatccaaactcgctatatttgcagggaccaaaaacatattttagca 40476221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 20489376 - 20489419
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagcata 463  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  20489376 caaactcgtcatatttgcagggaccaaaaacatattttagcata 20489419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 46026124 - 46026077
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||| |||||||| |||||||||||||||| ||| |||||||||||    
T  46026124 caaaatccaaactcgctatatttgcagggaccaaaaacatattttagc 46026077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 39819360 - 39819314
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttag 459  Q
    ||||||||||||||| |||||||||||||||  ||| ||||||||||    
T  39819360 caaaattcaaactcgctatatttgcagggactaaaaccatattttag 39819314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 39820622 - 39820662
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  39820622 caaactcgctatatttgcagggaccaaaaccatattttagc 39820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 52708635 - 52708675
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  52708635 caaactcgctatatttgcagggaccaaaagcatattttagc 52708675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 53121343 - 53121303
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  53121343 caaactcgctatatttgcagggaccaaaaacatattttagc 53121303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 34911837 - 34911886
Alignment:
Q  411 atcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||    
T  34911837 atcaaaatccaaactcgctatatttgcagggaccaaaatcatattttagc 34911886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 27571138 - 27571187
Alignment:
Q  411 atcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||  |||||||| |||||||||||||||| |||||||||||||||    
T  27571138 atcaaaacccaaactcgctatatttgcagggaccaaaatcatattttagc 27571187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 35604469 - 35604420
Alignment:
Q  411 atcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||| |||||||||||||||||||||  ||| ||| |||||||||||    
T  35604469 atcaaaactcaaactcgttatatttgcagaaaccaaaaacatattttagc 35604420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 3936619 - 3936579
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  3936619 caaactcgctatatttgcagggaccaaaaacatattttagc 3936579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 25254140 - 25254188
Alignment:
Q  411 atcaaaattcaaactcgttatatttgcagggacctaaatcatattttag 459  Q
    ||||||| ||||||||  |||||||||||||||| ||| ||||||||||    
T  25254140 atcaaaactcaaactctatatatttgcagggaccaaaagcatattttag 25254188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 25317930 - 25317978
Alignment:
Q  411 atcaaaattcaaactcgttatatttgcagggacctaaatcatattttag 459  Q
    ||||||| ||||||||  |||||||||||||||| ||| ||||||||||    
T  25317930 atcaaaactcaaactctatatatttgcagggaccaaaagcatattttag 25317978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 31540537 - 31540497
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||| |||||||||||||||||||| ||| |||||||||||    
T  31540537 caaattcgttatatttgcagggaccaaaaacatattttagc 31540497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 19675617 - 19675678
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||| | | |||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  19675617 tttttatcagggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagc 19675678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 42359357 - 42359404
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||| |||||||| |||||||||||||||| ||| |||||||||||    
T  42359357 caaaatccaaactcgctatatttgcagggaccaaaaacatattttagc 42359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 41935088 - 41935126
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatatttta 458  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  41935088 caaactcgttatatttgcagggaccaaaaacatatttta 41935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 30091052 - 30091113
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||| |||| ||||||| | |||||||| ||||||||| ||||| ||| |||||||||||    
T  30091052 tttttaccatggatcaaaacttaaactcgtcatatttgcatggaccaaaaccatattttagc 30091113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 55866693 - 55866648
Alignment:
Q  22 ttttgttcaacaatattttcatggatttggtgatgaagatggattt 67  Q
    ||||||||||| ||  |||||||||||||||||||||||| |||||    
T  55866693 ttttgttcaaccatgctttcatggatttggtgatgaagatagattt 55866648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 22204096 - 22204056
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  22204096 caaactcgctatatttgcagggaccaaaaacatattttagc 22204056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 41933859 - 41933819
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| ||||||||||| |||| |||||||||||||||    
T  41933859 caaactcgctatatttgcagagaccaaaatcatattttagc 41933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 1935 - 1863
Alignment:
Q  386 atttcgaaacttgtttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatatttta 458  Q
    ||||| |||||| ||||||  | | ||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  1935 atttcaaaacttttttttactagggatcaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 1863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 202627 - 202580
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  202627 caaaatccaaactcgttatatttgcagggaccaaaagcatattttagc 202580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 11217082 - 11217127
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatatttta 458  Q
    ||||||||||||||| |||||||||||||||| ||| |||||||||    
T  11217082 caaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 12385718 - 12385763
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatatttta 458  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||    
T  12385718 caaaatccaaactcgctatatttgcagggaccaaaatcatatttta 12385763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 5611525 - 5611565
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  5611525 caaactcgctatatttgcagggaccaaaatcatattttagc 5611565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 31489953 - 31489993
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  31489953 caaactcgttatatttgcagggaccaaaaacatattttagc 31489993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 12933467 - 12933420
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||||||||  |||||||||||||||| ||| |||||||||||    
T  12933467 caaaattcaaactcactatatttgcagggaccaaaagcatattttagc 12933420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 25037798 - 25037755
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattt 456  Q
    |||||||||||||||| ||||||||||||||  |||||||||||    
T  25037798 caaaattcaaactcgtcatatttgcagggactaaaatcatattt 25037755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 24197100 - 24197161
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||| || ||| ||||| ||||| ||| |||||||||||||||| ||| |||||||||||    
T  24197100 tttttaccaggaaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 24197161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 43123758 - 43123713
Alignment:
Q  22 ttttgttcaacaatattttcatggatttggtgatgaagatggattt 67  Q
    ||||||||||| ||  |||||||||||||||||||||||| |||||    
T  43123758 ttttgttcaaccatgctttcatggatttggtgatgaagatagattt 43123713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 24195648 - 24195608
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  24195648 caaactcgctatatttgcagggaccaaaaacatattttagc 24195608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 35212109 - 35212069
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||| ||||||||||||||| ||| |||||||||||    
T  35212109 caaactcgtcatatttgcagggaccaaaaacatattttagc 35212069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 9774085 - 9774040
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatatttta 458  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||||    
T  9774085 caaaactcaaactcgttatatttgcagggaccaaaaacatatttta 9774040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 27264234 - 27264274
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  27264234 caaactcgctatatttgcagggaccaaaatcatattttagc 27264274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 9774906 - 9774946
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  9774906 caaactcgctatatttgcagggaccaaaagcatattttagc 9774946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 27262949 - 27262909
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  27262949 caaactcgctatatttgcagggaccaaaaacatattttagc 27262909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 35721142 - 35721102
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||| |||||||||||||||||||| ||| |||||||||||    
T  35721142 caaattcgttatatttgcagggaccaaaaacatattttagc 35721102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 121003 - 121043
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  121003 caaactcgttatatttgcagggaccaaaagcatattttagc 121043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 28996909 - 28996833
Alignment:
Q  386 atttcgaaacttgtttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagcat 462  Q
    ||||| |||||| |||||| || | | |||||  |||||||  |||||||||||||||| |||||||||||||||||    
T  28996909 atttcaaaacttttttttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcat 28996833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 3483681 - 3483635
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttag 459  Q
    ||||| ||||||||| |||||||||||||||| ||| ||||||||||    
T  3483681 caaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 4183069 - 4183031
Alignment:
Q  47 tttggtgatgaagatggatttgaatgaat-atttttgtt 84  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  4183069 tttggtgatgaagatggatttgaatgaatgatttttgtt 4183031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 1420439 - 1420500
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||| | | ||| || |||||||| |||||||||||||||| ||| |||||||||||    
T  1420439 tttttatcagggaccaatatccaaactcgctatatttgcagggaccaaaaacatattttagc 1420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 10292878 - 10292817
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    ||||||||| | |||||||  |||| ||| |||||||| ||||||| |||||||||||||||    
T  10292878 tttttatcaaggatcaaaacgcaaattcgctatatttgaagggaccaaaatcatattttagc 10292817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 10717162 - 10717122
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  10717162 caaactcgctatatttgcagggaccaaaagcatattttagc 10717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 10718466 - 10718506
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  10718466 caaactcgctatatttgcagggaccaaaagcatattttagc 10718506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 28998011 - 28998051
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  28998011 caaactcgctatatttgcagggaccaaaaacatattttagc 28998051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 36588263 - 36588223
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  36588263 caaactcgctatatttgcagggaccaaaagcatattttagc 36588223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 29777 - 29730
Alignment:
Q  413 caaaattcaaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||| |||||||||| |||||||||||||| ||| |||||||||||    
T  29777 caaaatccaaactcgttttatttgcagggaccaaaagcatattttagc 29730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 3279496 - 3279555
Alignment:
Q  399 tttttatcatgaatcaaaattcaaactcgttatatttgcagggacctaaatcatatttta 458  Q
    |||||| || ||| ||||||||||||||| |||||||||||||| | ||| |||||||||    
T  3279496 tttttaccaggaaccaaaattcaaactcgctatatttgcagggatcaaaaacatatttta 3279555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 16999344 - 16999306
Alignment:
Q  47 tttggtgatgaagatggatttgaatgaat-atttttgtt 84  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  16999344 tttggtgatgaagatggatttgaatgaatgatttttgtt 16999306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 18810573 - 18810533
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||  |||||||||||||||| |||||||||||||||    
T  18810573 caaactcactatatttgcagggaccaaaatcatattttagc 18810533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 21165287 - 21165247
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  21165287 caaactcgctatatttgcagggaccaaaagcatattttagc 21165247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 449 - 489
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||  |||||||||||||||| |||||||||||||||    
T  449 caaactcactatatttgcagggaccaaaatcatattttagc 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 374376 - 374336
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||| | |||||||||||||||    
T  374376 caaactcgctatatttgcagggatcaaaatcatattttagc 374336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 376387 - 376427
Alignment:
Q  420 caaactcgttatatttgcagggacctaaatcatattttagc 460  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  376387 caaactcgctatatttgcagggaccaaaagcatattttagc 376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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