View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_high_9 (Length: 460)
Name: NF14468_high_9
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_high_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 37811309 - 37810848
Alignment:
| Q |
1 |
ataaaatggaagagtaaatttggagaagctcaagcaaaagaacaaaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37811309 |
ataaaatggaagagtaaatttggagaagctcaagcaaaagaacagaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccga |
37811210 |
T |
|
| Q |
101 |
acttaataaaaattacagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgagtggtgggacgtggaacttctgcattctggaaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37811209 |
acttaatagaaattacagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgggtggtgggacgtggaacttctgcattctggaaa |
37811110 |
T |
|
| Q |
201 |
ttatggcgacattgccaatggtactata--gatgaaggcaatatgaaaatggaagaattcaacttttatgtggaaactcctcggcctattgaaccgcctg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37811109 |
ttatggcgacattgccaatggtactatatagatgaaggcaatatgaaaatggaagaattcaacttttatgtggaaactcctcggcctattgaaccgcctg |
37811010 |
T |
|
| Q |
299 |
ctgagcccgcccctccaccacctcaacttatcaagccaactaaacaggagcagaaaaaactaaggacccaaaggcgtatagctaaggagaaaaagcgaca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37811009 |
ctgagcccgcccctccaccacctcaacttatcaagccaactaaacaggagcagaagaaactaaggacccaaaggcgtatagctaaggagaaaaagcgaca |
37810910 |
T |
|
| Q |
399 |
ggagatgattagacagggtgtcatagaaccgccaaaaccaaaggtcaagatgagtaatttac |
460 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37810909 |
ggagatgattagacagggtttcatagaaccgccaaaaccaaaggtcaagatgagtaatttac |
37810848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 173 - 460
Target Start/End: Complemental strand, 52353004 - 52352717
Alignment:
| Q |
173 |
gggacgtggaacttctgcattctggaaattatggcgacattgccaatggtactatagatgaaggcaatatgaaaatggaagaattcaacttttatgtgga |
272 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||| || ||||||| |||||||| |
|
|
| T |
52353004 |
gggacgtggcacttctgcattctggaaattatggtgacattgccaacggtacaatagacgaaggcaatataaaaatggaaaaaatcaacttctatgtgga |
52352905 |
T |
|
| Q |
273 |
aactcctcggcctattgaaccgcctgctgagcccgcccctccaccacctcaacttatcaagccaactaaacaggagcagaaaaaactaaggacccaaagg |
372 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
52352904 |
acatcctcggcctattgagccgcctgctgagcctgcccctccaccacctcaacctctcaagctaactaaacaagagcagaagaaactaaggacccaaagg |
52352805 |
T |
|
| Q |
373 |
cgtatagctaaggagaaaaagcgacaggagatgattagacagggtgtcatagaaccgccaaaaccaaaggtcaagatgagtaatttac |
460 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52352804 |
cgtatagctaaggagaaagagcgacaggagatgattagacagggtgtcatagaaccgccaaaaccaaaggtcaagatgagtaatttac |
52352717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 52355198 - 52355035
Alignment:
| Q |
11 |
agagtaaatttggagaagctcaagcaaaagaacaaaaggacaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccgaacttaataaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52355198 |
agagtaaatttggagaagctcaagcaaaagagcagaaggccaaacaagcacagctagcaaaggcaaaggctgctcctgatatcaatccgaacttaataga |
52355099 |
T |
|
| Q |
111 |
aattacagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgagtggtgg |
174 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52355098 |
aattacagagagagttgtaatgaaagcaaaactgaaggaccgtattccagatattgagtggtgg |
52355035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 115 - 400
Target Start/End: Complemental strand, 17199881 - 17199596
Alignment:
| Q |
115 |
acagagagagttgcaatgaaagcaaaactgaaggacccaattccagatattgagtggtgggacgtggaacttctgcattctggaaattatggcgacattg |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
17199881 |
acagagagagttgtaatgaaagcaaaactgaaggacccaattccagatattgagtggtgggacatggcacttctgcattccggaaattatcctgacattg |
17199782 |
T |
|
| Q |
215 |
ccaatggtactatagatgaaggcaatatgaaaatggaagaattcaacttttatgtggaaactcctcggcctattgaaccgcctgctgagcccgcccctcc |
314 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17199781 |
ccaacggtactatagatgaaggcgatctgaaaatggaaaaattcgacttttatgtggaacatcctcggcctattgaaccgcctgctgagcccgcccctcc |
17199682 |
T |
|
| Q |
315 |
accacctcaacttatcaagccaactaaacaggagcagaaaaaactaaggacccaaaggcgtatagctaaggagaaaaagcgacagg |
400 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17199681 |
accacctcaacctctcaagccaactaaacaggagcagaagaaactaaggactcaagggcgtatagctaaggagaaagagcgacagg |
17199596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 460
Target Start/End: Complemental strand, 17199588 - 17199551
Alignment:
| Q |
423 |
agaaccgccaaaaccaaaggtcaagatgagtaatttac |
460 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17199588 |
agaaccgccaaaaccaaagatcaagatgagtaatttac |
17199551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University