View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_10 (Length: 461)
Name: NF14468_low_10
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 486393 - 486830
Alignment:
| Q |
8 |
cagagaaaggaggttttcctggttggccaagcattacagattcattcatcaacatcaaaacaacagaagacatggttggcctatcaaatgcatcttcttg |
107 |
Q |
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| T |
486393 |
cagagaaaggaggttttcctggttggccaagcattacagattcattcatcaacatcaaaacaacagaagacatggttggcctatcaaatgcatcttcttg |
486492 |
T |
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| Q |
108 |
aacacataacagtccaatattcatgtatctcaaaaactggtctccagggcataataataatggatcccttaattccaatccctttccatcattccataga |
207 |
Q |
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| T |
486493 |
aacacataacagtccaatattcatgtatctcaaaaactggtctccagggcatagtaataatggatcccttaattccaatccctttccatcattccataga |
486592 |
T |
|
| Q |
208 |
tgccatgcctgaataatgattaatgaattaattttatcaatggtactcatgtagtagattgagattacagacacttacatatgctagaaggctaggagtg |
307 |
Q |
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| T |
486593 |
tgccatgcctgaataatgattaatgaattaatgtgatcaatggtactcatgtaatagattgagattacagacacttacatatgctagaaggctaggagtg |
486692 |
T |
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| Q |
308 |
gttttggagtaacagaaacccgcgttacgtatccctgtaatgatctcaagcaatagtactccaaagccaaaaacatcagattttatggaatatagaccct |
407 |
Q |
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| T |
486693 |
gttttggagtaacagaaacccgcgttacgtatccctgtaatgatctcaagcaatagtactccaaagccaaaaacatcagattttatggaatatagaccct |
486792 |
T |
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| Q |
408 |
ccattgcatactccggagccatatatccactacaaaat |
445 |
Q |
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| T |
486793 |
ccattgcatactccggagccatatatccactacaaaat |
486830 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 36290843 - 36290782
Alignment:
| Q |
380 |
acatcagattttatggaatatagaccctccattgcatactccggagccatatatccactaca |
441 |
Q |
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| T |
36290843 |
acatcagatttgactgaaaatagaccctccattgcgtattctggagacatatatccactaca |
36290782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 438
Target Start/End: Complemental strand, 1077642 - 1077554
Alignment:
| Q |
350 |
atctcaagcaatagtactccaaagccaaaaacatcagattttatggaatatagaccctccattgcatactccggagccatatatccact |
438 |
Q |
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| T |
1077642 |
atctctagcaataatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggcatattctggagccatataaccact |
1077554 |
T |
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