View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_13 (Length: 443)
Name: NF14468_low_13
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 29237046 - 29237370
Alignment:
| Q |
12 |
cattttcatctttcccagcccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtccccacggcttctttccattcaacttg-t |
110 |
Q |
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| T |
29237046 |
cattttcttcttttccagaccatgcctttagggtactctgttgaagtgcccttccaaaagagaaggaaagggtccatggcttcttaccatt-aacttggt |
29237144 |
T |
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| Q |
111 |
tcatggcattgagattgagtgttgcctcctcctcactctgtccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagcttt |
210 |
Q |
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| T |
29237145 |
taatggcgttgaggttgacgctggcctcttcctcactctgtccaccagacaagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctct |
29237244 |
T |
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| Q |
211 |
aacggtatactcagctataacttcgggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatga |
310 |
Q |
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| T |
29237245 |
aacggtgtgctcagcaacaacctcgggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttcaaggaggacatgg |
29237344 |
T |
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| Q |
311 |
tgatcgtttaaagctttgtagcatgc |
336 |
Q |
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| T |
29237345 |
tggtcattcaaggccttgtagcatgc |
29237370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 29233296 - 29233581
Alignment:
| Q |
12 |
cattttcatctttcccagcccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtccccacggcttctttccattcaacttgtt |
111 |
Q |
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| T |
29233296 |
cattttcttcttttccagaccatgccttaagggtactctgttgaagtgccattccaaaagagaaagaaagagtccatggcttcttaccattgacttggtt |
29233395 |
T |
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| Q |
112 |
catggcattgagattgagtgttgcctcctcctcactctgtccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagcttta |
211 |
Q |
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| T |
29233396 |
aatggcgttgaggttgacgctggcctcttcctcactctgttcaccagataagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctcta |
29233495 |
T |
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| Q |
212 |
acggtatactcagctataacttcgggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttc |
297 |
Q |
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| T |
29233496 |
acggtgtgctcagcaacaacctcgggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttc |
29233581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 42028177 - 42028084
Alignment:
| Q |
335 |
gcagctagaacacgttcagtcacctcggcacacttgttgatgtcatgagatccatctacgaggatttcgggctcgactataggaactaagccat |
428 |
Q |
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| T |
42028177 |
gcagccagaacacgttcagtcacctcagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccat |
42028084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 26629466 - 26629803
Alignment:
| Q |
14 |
ttttcatctttcccagcccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtccccacggcttctttccattcaacttgttca |
113 |
Q |
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| T |
26629466 |
ttttcatcttttccaccccatgccttaagagtactttgctgaagtgcccttccataagagaatgtaagagtccaaggcttctttcccttaagtttgttca |
26629565 |
T |
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| Q |
114 |
tggcattgagattgagtgttgcctcctcctcactctgtccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagctttaac |
213 |
Q |
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| T |
26629566 |
ttgcattaaggttaacagatgcttcctcttcactttgtccaccagacaagaaaactatagcaggaaccgcggcaggaacggttctcaacaatgctcggac |
26629665 |
T |
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| Q |
214 |
ggtatactcagctataacttcgggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatgatga |
313 |
Q |
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| T |
26629666 |
ggtgtgttgggctataacctcaggagcaactttaggagaatctgatcctggtgtaaccatattaggcttcaaaagagtaccttcaagaagaacatgatgg |
26629765 |
T |
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| Q |
314 |
tcgtttaaagctttgtagcatgcagctagaacacgttc |
351 |
Q |
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| T |
26629766 |
tcacttagagccttgtaacatgctgcaagaacgcgttc |
26629803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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