View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_low_14 (Length: 439)
Name: NF14468_low_14
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 29 - 427
Target Start/End: Original strand, 23345158 - 23345569
Alignment:
| Q |
29 |
tttagatgccttcactcatctttctaaaatttatgcacctataattactctcaagttaggaatttcaactaccatagtgatttcttctccaaaaatagcc |
128 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23345158 |
tttagatactttcactcacctttctaaaatttatggacctataattactctcaagttaggaatttcaaccaccatagtgatttcttctccaaaaatagcc |
23345257 |
T |
|
| Q |
129 |
aaagaagcacttcacacatatgacatagttttttctagcaggacagtcccagatgctgcaaagacacttggtcatgacaaagtttcaatggtatggatac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23345258 |
aaagaagcacttcacacatatgacatagttttttctagcaggacagtcccagatgctgcaaagacacttggtcatgacaaagtttcaatggtatggatac |
23345357 |
T |
|
| Q |
229 |
caccatcggctaaatggaggactcttagaaaagcttgtgctacaaaaatattctcacctcaacaacttgacacaacaaagttccatcgcaagagaaaagt |
328 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
23345358 |
caccatcagctaaatggaggactcttagaaaagcttgtgctacaaaaatattctcatctcaacaacttgactcaacaaaattccatcgcaagagaaaagt |
23345457 |
T |
|
| Q |
329 |
gcaagacttgataaactatgt-------------gagaaaggcgaagcatttgattttggagaagttgttcttgcaacagttatgaattcgatatcagaa |
415 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
23345458 |
gcaagacttgataaactatgtgcacaagtgttgcgagaaaggtgaagcctttgattttggagaagtttcttttgcaacagttatgaattcgatatcagaa |
23345557 |
T |
|
| Q |
416 |
acgttcatctct |
427 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
23345558 |
actttcatctct |
23345569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University