View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_15 (Length: 433)
Name: NF14468_low_15
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 45024840 - 45025272
Alignment:
| Q |
1 |
attgcatttatattatatgcataaatgttttgaccagatgggaattactagtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccat |
100 |
Q |
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| T |
45024840 |
attgcatttatattatatgcataaatgttttgatcagatgggaattactagtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccat |
45024939 |
T |
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| Q |
101 |
atgcttggaatacacatgcaaagagccatgattgtggtttcaattgtgagtgtattccttgccatcatatgggcaaatacaaaacaaattttagttgtta |
200 |
Q |
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| T |
45024940 |
atgcttggaatacacatgcaaagagccatgattgtggtttcaattgtgagtgtattccttgccatcatatgggcaaatacaaaacaaattttagttgtta |
45025039 |
T |
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| Q |
201 |
tgcatcaggacaaagccatatccaaggaagctggttcatacgcgttgtttctgataccgagtttgttcgcatatggtcctctccagtgcattctcaagtt |
300 |
Q |
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| T |
45025040 |
tgcatcaggacaaagccatatccaaggaagctggttcatacgcgttgtttctgataccgagtttgttcgcatatggtcctctccagtgcattctcaagtt |
45025139 |
T |
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| Q |
301 |
cttgcaaacacaaaacattgtcctcccaatggtgataacttctgggattgcagctttgcttcatacccttttgtgttggcttttggtttttgaatttaag |
400 |
Q |
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| T |
45025140 |
cttgcaaacacaaaacattgtcctcccaatggtgataacttctgggattgcagctttgcttcatacccttttgtgttggcttttggtttttgaatttaag |
45025239 |
T |
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| Q |
401 |
cttggaagtaaaggggcagctatatccaattct |
433 |
Q |
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| T |
45025240 |
cttggaagtaaaggggcagctatatccaattct |
45025272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 30471858 - 30471780
Alignment:
| Q |
51 |
gtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagagccat |
129 |
Q |
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| T |
30471858 |
gtgcactagaaacattttgtggtcaatcatatggagcacaaaaataccatatggtgggaatacacttgcagagagccat |
30471780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 30437753 - 30437691
Alignment:
| Q |
50 |
agtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaata |
112 |
Q |
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| T |
30437753 |
agtgcactagacacattttgtggtcaagcatatggagctcaacagtatcatatggttggaata |
30437691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 30381453 - 30381373
Alignment:
| Q |
50 |
agtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagagccatg |
130 |
Q |
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| T |
30381453 |
agtgcactagacacattttgtggtcaagcatatggagcaaagcaatatcatatggttggcatatacacacaaagagccatg |
30381373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 30502812 - 30502739
Alignment:
| Q |
57 |
tggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagagccatg |
130 |
Q |
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| T |
30502812 |
tggacacattatgtggccagtcatatggcgcaaagcagtaccgcatgctaggcatacacatgcaaagagccatg |
30502739 |
T |
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