View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_low_16 (Length: 405)
Name: NF14468_low_16
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 152 - 391
Target Start/End: Original strand, 3331666 - 3331905
Alignment:
| Q |
152 |
cctcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatatcatcatgatcaatacggag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3331666 |
cctcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatgtcatcatgatcaatacggag |
3331765 |
T |
|
| Q |
252 |
aacgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggaggcatagcttgaaaaagtgg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3331766 |
aacgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggatgcatagcttgaaaaagtgg |
3331865 |
T |
|
| Q |
352 |
agcagttgaatctcctaaaagctgttgttgttgttgctga |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331866 |
agcagttgaatctcctaaaagctgttgttgttgttgctga |
3331905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 3331522 - 3331594
Alignment:
| Q |
8 |
tagataatactaataaggatacatcaatttaattacagtctcaaattcaacatacatcaactcacctagaacc |
80 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3331522 |
tagataataataataaggatacatcaatttaattacagtctcaaattcagcatacatcaactcacctagaacc |
3331594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University