View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_17 (Length: 383)
Name: NF14468_low_17
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 35105264 - 35104897
Alignment:
| Q |
1 |
cactttcttattatctgcactgtttctgtgttggattgagagaagacacgaaaacaacgaggacgagcatagttggtgcgaggaagtgtgatggtggtgg |
100 |
Q |
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| T |
35105264 |
cactttcttattatctgcactgtttctgtgttggattgagagaagacacgaaaacaacgaggacgagcatagttggtgcgaggaagtgtgatggtggtgg |
35105165 |
T |
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| Q |
101 |
tggtgaagaagtggtaagagaaggtgttggatggaaatggaataatggccatttgaagacaggtagaagagaatagagaagaagtatgtgatagtgtgaa |
200 |
Q |
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| T |
35105164 |
tggtgaagaagtggtaagagaaggtgttggatggaaatggaataatcgccatttgaagacaggtagaagagaatagagaagaagtatgtgatagtgtgaa |
35105065 |
T |
|
| Q |
201 |
cgaatgaatgaatgtgctatgtgatagtacaatataagaagaaagacattgacattaatagagtactatgtgtatagttgtagatgacgaaataagagaa |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35105064 |
cgaatgaatgtatgtgctatgtgatagtacaatataagaagaaagacattgacattaatagcgtactatgtgtatagttgtagatgacgaaataagagaa |
35104965 |
T |
|
| Q |
301 |
tcaaa--nnnnnnnnnnnngaacagtccgtaataacaatgcaccgcattgtttggtgatggtgactac |
366 |
Q |
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| T |
35104964 |
tcaaatctctctctctctcgaagagtccgtaataacaatgcaccgcattgtttggtgatggtgactac |
35104897 |
T |
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