View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_20 (Length: 375)
Name: NF14468_low_20
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 1379599 - 1379938
Alignment:
| Q |
20 |
tttgtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattga------------------tttgaagaggagca |
101 |
Q |
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| T |
1379599 |
tttgtttcattcttgagaaatgtaatggtttgtatt-catgttggctgcttatttgattggctattgatttgatttgcaggtttgatttgaagaggagca |
1379697 |
T |
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| Q |
102 |
tcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttatttactgctttttgttttc |
201 |
Q |
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| T |
1379698 |
tcgacgtctcataaatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttatttactgctttttgttttc |
1379797 |
T |
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| Q |
202 |
acatctctgaaactaattgccttgctttatgtttgatttcattggttttagtttttatagttctcagg-ttttttaaatggttcttcgctttatgattta |
300 |
Q |
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| T |
1379798 |
acatctctgaaactaattgccttgctttatgtttgatttcattggttttagtttttatagttctcaggtttttttaaacggttcttcgctttatgattta |
1379897 |
T |
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| Q |
301 |
tagtctggttggattcactggatgaactctgtataaatttt |
341 |
Q |
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| T |
1379898 |
tagtctggttggattcactggatgaactctgtataaatttt |
1379938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 40908904 - 40908973
Alignment:
| Q |
148 |
aacctatatgtatgttatgtttgatgtccattttatttactgctttttgttttcacatctctgaaactaa |
217 |
Q |
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| T |
40908904 |
aacctatatgtatgttatgtttgatgtctattttatttactgttttttgtttttacagctctgaaactaa |
40908973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 1379980 - 1380018
Alignment:
| Q |
337 |
attttgatgttgaggagaatttttaattgcttgcatatt |
375 |
Q |
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| T |
1379980 |
attttgatgttgaggagaatttttaattgcttgcatatt |
1380018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 43857501 - 43857578
Alignment:
| Q |
108 |
tctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttattt |
185 |
Q |
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| T |
43857501 |
tctcatacctatgatgaatgttcaaaatgaccaacttttgaacctttatgttttttttgtttgatgtccattttattt |
43857578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 40908994 - 40909033
Alignment:
| Q |
225 |
gctttatgtttgatttcattggttttagtttttatagttct |
265 |
Q |
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| T |
40908994 |
gctttatgtttgatttcatt-gttttagtttttattgttct |
40909033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 3082093 - 3082210
Alignment:
| Q |
101 |
atcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttatttactg-ctttttgttt |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
3082093 |
atcgacatctcatacatataatgaagcttcaaaatgaccagctttttaacctatatgtatgttatgtttgatgtctattttatttactgtttttttgttt |
3082192 |
T |
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| Q |
200 |
tcacatctctgaaactaa |
217 |
Q |
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| T |
3082193 |
ttacatctctgaaactaa |
3082210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 3081997 - 3082066
Alignment:
| Q |
23 |
gtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttga |
92 |
Q |
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| T |
3081997 |
gtttcattcttgagaaatgtgatggttacaatttcatattggctacttatttgattggttattgatttga |
3082066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 6605167 - 6605476
Alignment:
| Q |
20 |
tttgtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttg------------------aagaggagca |
101 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||| | |
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| T |
6605167 |
tttgtttcattcttgagaaatgtaatggttcctatttcatattggctacttatttgattggctattgatttggtatgcgagtttgattggaagaggatga |
6605266 |
T |
|
| Q |
102 |
tcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttat--gtttgatgtccattttatttactgctttttgttt |
199 |
Q |
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| || ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||||||| ||| ||| | |||||| || |
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| T |
6605267 |
ttaacatctcatacatataatgaagcttcaaaatgacccgtttttgaacctatatgtatgttatatgtttgatgtccactttgttt--tacttttt-ttc |
6605363 |
T |
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| Q |
200 |
tcacatctctgaaactaattg-------------ccttgctttatgtttgatttcattggttttagtttttatagttctcaggttttttaaatggttctt |
286 |
Q |
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| T |
6605364 |
ccatatctctgaaactaagtagtgtcatggctaaccttgctttatgtttgatttcgttggttttagtttttatagttctcatattttgtaaatggttctt |
6605463 |
T |
|
| Q |
287 |
cgctttatgattt |
299 |
Q |
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|||||||||||| |
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| T |
6605464 |
tgctttatgattt |
6605476 |
T |
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