View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_23 (Length: 360)
Name: NF14468_low_23
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 5493158 - 5492819
Alignment:
| Q |
1 |
ctgatgacacgaaaatcagtatcgccgacaccggcggtgtctgcatctataagtagattaagtgaaggacctggttctgttggtagtgtaacaaaaggtt |
100 |
Q |
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| T |
5493158 |
ctgatgacacgaaaatcagtatcgccgacacaggcggtgtctgcatctataagtagattaagtgaaggacctggttctgttggtagtgtaacaaaaggtt |
5493059 |
T |
|
| Q |
101 |
cagaaccagtttcagatcacgttgatgagagtttgaatttgagatcttcttccgagaggcttgttgaagaagctaatgaaacggaaggtggaaaaccgaa |
200 |
Q |
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| T |
5493058 |
cagaaccagtttcagatcacgttgatgagagtttgaatttgagatcttcttccgagaggcttgttgaagaagctaatgaaacggaaggtggaaaaccgaa |
5492959 |
T |
|
| Q |
201 |
gttgaaagcattgcattgggacaaagttcgtgcaacttctgatcgtgctactgtgtgggaccaaataaaatcaagctcgtttcagtgagtataaattgaa |
300 |
Q |
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| T |
5492958 |
gttgaaagcattgcattgggacaaagttcgtgcaacttctgatcgtgctactgtgtgggaccaaataaaatcaagctcgtttcagtgagtataaattgaa |
5492859 |
T |
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| Q |
301 |
tatttaatcctctatatatcaattttgggattgtagttgt |
340 |
Q |
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| T |
5492858 |
tatttaatcctctatatatcatttttgggattgtagttgt |
5492819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 39942006 - 39942100
Alignment:
| Q |
192 |
aaaaccgaagttgaaagcattgcattgggacaaagttcgtgcaacttctgatcgtgctactgtgtgggaccaaataaaatcaagctcgtttcagt |
286 |
Q |
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|||||| || |||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
39942006 |
aaaacctaaattgaaagctctgcattgggataaagttcgtgctacttcagatcgtgctactgtgtgggatcaattaaaatcaagctcatttcagt |
39942100 |
T |
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