View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14468_low_26 (Length: 325)

Name: NF14468_low_26
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14468_low_26
NF14468_low_26
[»] chr5 (1 HSPs)
chr5 (19-316)||(2168789-2169083)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 2169083 - 2168789
Alignment:
Q  19 gacatgactttgtttattatttaacaggtttaatgaactgttgatacacatgctcaaaatctatccctgacgcaaattcaatccatcaaacctactactc 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  2169083 gacatgactt-gtttattatttaacaggtttaatgaactgttgatacacatgctcaaaatctatccctgacgcgaattcaatccaccaaacctactactc 2168985  T
Q  119 ttcttgtccttgtctgagtctctgccttaagtt-aaaatgttcgttggcatttttaacctttgtgttgggtttgggaacagtcagagaatacagagtcaa 217  Q
    ||   |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  2168984 tt---gtccttgtctgagtctctaccttaagtttaaaatgttcgttgacatttttaacctttgtgttgggtttgggaacagtccgagaatacatagtcaa 2168888  T
Q  218 tagacagatcgtaaccatagatttgttaaatgttaccccacgttaaaataatagaaatcatttttggacatcaaaactttgacaaacactgtttttcat 316  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2168887 tagacagatcgtaatcatagatttgttaaatgttaccccacgttaaaataatataaatcatttttggacatcaaaactttgacaaacactgtttttcat 2168789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University