View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14468_low_3 (Length: 608)
Name: NF14468_low_3
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_3 |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 341 - 594
Target Start/End: Original strand, 1503167 - 1503420
Alignment:
| Q |
341 |
attgtgtccataataggtaaacaaccaaaaaagaaattgataaattcaatctcatgtagcacaccaccatgtcttccaaatttaccacttttagcttgct |
440 |
Q |
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| T |
1503167 |
attgtgtccataataggtaaacaaccaaaaaagaaattgataaattcaatctcttgtagcacaccaccatgtcttccaaattcaccacttttagcttgct |
1503266 |
T |
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| Q |
441 |
aagtacagaatctgaggggcattcttttaaccaaaaatctaaatcttatgcatatatggaaagtttaatgaaacctttcaatttcaattgagtaataaac |
540 |
Q |
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| T |
1503267 |
aagtacagaatctgaggggcattcttttaaccaaaaatctaaatcttatgcatatatggaaagtttaatgaaacctttcaatttcaattgagtaataaac |
1503366 |
T |
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| Q |
541 |
cttaaatatttgactctaggggtggatgatatgcaggtattaataacagaatgt |
594 |
Q |
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| T |
1503367 |
cttaaatatttgactgtaggggtggatgatatgcaagtattaataacagaatgt |
1503420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 1501776 - 1502012
Alignment:
| Q |
21 |
gttgattcaacctagtttcacattcattcttttcaacagatgaatggtgttctattgtgatgtatagctaacatgcatgcttttcatttttgcacgttct |
120 |
Q |
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| T |
1501776 |
gttgattcaacctagtttcacattcattcttttcaacagatgaatggtgttctattgtgatgtatagctaacatgcatgcttttcatttttgcacgttct |
1501875 |
T |
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| Q |
121 |
tgaagtatttgagcatagcttatcatgacctagggcattttgtatgatgtataacaaattatagtattgaaaatggattcggtaagttttaaggaaatat |
220 |
Q |
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| T |
1501876 |
tgaagtatttgagcatagcttatcatgacctagggcattttgtatgatgtataacaaattatagtattgaaaatggattcggtaagttttaaggaaatat |
1501975 |
T |
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| Q |
221 |
ctgtagtcattcactagattacaagctcttccaatct |
257 |
Q |
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| T |
1501976 |
ctgtagtcattcactagattactagctcttccaatct |
1502012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 1502236 - 1502310
Alignment:
| Q |
271 |
cttaaagttgtgaactcaaaagatatgagttgtgtgccacatgagattgaattcatcaaatttttgcttgattgt |
345 |
Q |
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| T |
1502236 |
cttaaagttgtgaactcaaaagatatgagtcgtgtgccacacgagattgaattcatcaaatttttgcttggttgt |
1502310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 1506686 - 1506746
Alignment:
| Q |
98 |
tgcttttcatttttgcacgttcttgaagtatttgagcatagcttatcatgacctagggcat |
158 |
Q |
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| T |
1506686 |
tgcttttcattcttgcactttcttgaagtatttgagcagaggttatcatgacctagggcat |
1506746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 1506946 - 1506886
Alignment:
| Q |
360 |
aacaaccaaaaaagaaattgataaattcaatctcatgtagcacaccaccatgtcttccaaa |
420 |
Q |
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| T |
1506946 |
aacaaccaagcaaaaaattgataaattcaatctcatgtagcacacccccatcccttccaaa |
1506886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 73037 - 73005
Alignment:
| Q |
106 |
atttttgcacgttcttgaagtatttgagcatag |
138 |
Q |
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| T |
73037 |
atttttgcacgttcttgaagtatttgagcatag |
73005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 61169 - 61111
Alignment:
| Q |
101 |
ttttcatttttgcacgttcttgaag-tatttgagcatagcttatcatgacctagggcat |
158 |
Q |
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| T |
61169 |
tttttatttttgcacgttcttgaagttacttgagcataggtcatcatgacctaaggcat |
61111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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