View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_low_34 (Length: 265)
Name: NF14468_low_34
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_34 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 32 - 258
Target Start/End: Original strand, 2246331 - 2246557
Alignment:
| Q |
32 |
gattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagctacaataatatcaat |
131 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2246331 |
gattgatttcaacaacaacaatctgcttggtgagttgccaagggcattggtaaacagcagaagtctagaattctttgatgttagctacaataatatcaat |
2246430 |
T |
|
| Q |
132 |
gattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggtgctctggcaacatga |
231 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
2246431 |
gattcatttcctttttggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgaattccatggagacattaggtgctctggcaatatga |
2246530 |
T |
|
| Q |
232 |
catgcacattttctaagcttcatatca |
258 |
Q |
| |
|
||||||||||||| |||||||| |||| |
|
|
| T |
2246531 |
catgcacattttccaagcttcacatca |
2246557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 2134892 - 2134714
Alignment:
| Q |
80 |
ggtaaacagcagaattctagaattctttgatgttagctacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattg |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2134892 |
ggtaaacagcagaattctagaattctttgatgttagctacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattg |
2134793 |
T |
|
| Q |
180 |
tctttaagtaacaatgcattccatggagacattaggtgctctggcaacatgacatgcacattttctaagcttcatatca |
258 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||| |
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|
| T |
2134792 |
tctttaggtaacaatgaattccatggagacgttaggtgctctggcaacatgacatgcacattttccaaacttcacatca |
2134714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 2122167 - 2121940
Alignment:
| Q |
17 |
aaattgccttcaaaagattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagc |
116 |
Q |
| |
|
||||| ||||||| |||||||||| || ||||||||||||||||||||| |||||||||| ||||| |||| |||| || ||||||||||||||||| |
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|
| T |
2122167 |
aaattcccttcaacagattgatcttagcaacaacaatctgcagggtcagttgccaagggctttggtcaacaatagaaggctggaattctttgatgttagt |
2122068 |
T |
|
| Q |
117 |
tacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggt |
216 |
Q |
| |
|
|| || || |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2122067 |
tataacaacatcaatgattcatttccattctggatgggagagttacccgagttgaaggtattgtctttaagtaacaatgaattccatggagacattaggt |
2121968 |
T |
|
| Q |
217 |
gctctggcaacatgacatgcacattttc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2121967 |
gctctggcaacatgacatgcacattttc |
2121940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 2065376 - 2065135
Alignment:
| Q |
17 |
aaattgccttcaaaagattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagc |
116 |
Q |
| |
|
||||| ||||||| |||| ||||| || ||||||||||||||||||||| |||||||||| ||||| |||| |||| || ||||||||||||||||| |
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|
| T |
2065376 |
aaattcccttcaacagatagatcttagcaacaacaatctgcagggtcagttgccaagggctttggtcaacaatagaaggctggaattctttgatgttagt |
2065277 |
T |
|
| Q |
117 |
tacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggt |
216 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
2065276 |
tataacaatatcaatgattcatttccattctggatgggagagttacccgagttgaaggtattgtctttaactaacaatgaattccatggagacattaggt |
2065177 |
T |
|
| Q |
217 |
gctctggcaacatgacatgcacattttctaagcttcatatca |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
2065176 |
gctctggcaacatgacatgcacattttccaaacttcacatca |
2065135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 2072484 - 2072243
Alignment:
| Q |
17 |
aaattgccttcaaaagattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagc |
116 |
Q |
| |
|
||||| |||| || |||||||||| || ||||||||||||||||||||| |||||||||| ||||| |||| |||| || ||||||||||||||||| |
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|
| T |
2072484 |
aaattcccttaaacagattgatcttagcaacaacaatctgcagggtcagttgccaagggctttggtcaacaatagaaggctggaattctttgatgttagt |
2072385 |
T |
|
| Q |
117 |
tacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggt |
216 |
Q |
| |
|
|| || || |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2072384 |
tataacaacatcaatgattcatttccattctggatgggagagttaccggagttgaaggtattgtctttaagtaacaatgaattccatggagacattaggt |
2072285 |
T |
|
| Q |
217 |
gctctggcaacatgacatgcacattttctaagcttcatatca |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
2072284 |
gctctggcaacatgacatgcacattttccaaacttcacatca |
2072243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 32 - 258
Target Start/End: Complemental strand, 2056071 - 2055846
Alignment:
| Q |
32 |
gattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagctacaataatatcaat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||| ||| | |||||||| | || ||||||||| |
|
|
| T |
2056071 |
gattgatctcagtaacaacaatctgcagggtgagttgccaagggaattggtaaacaacagaaggctagagttcatcgatgttagtcataacaatatcaat |
2055972 |
T |
|
| Q |
132 |
gattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggtgctctggcaacatga |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
2055971 |
gattcatttccattctggctgggagatttacc-gagttgaaggtattgtctttaagtaacaatgaattccatggagacattaggtgttctggcaacataa |
2055873 |
T |
|
| Q |
232 |
catgcacattttctaagcttcatatca |
258 |
Q |
| |
|
|||||||||||| |||||||| |||| |
|
|
| T |
2055872 |
aatgcacattttccaagcttcacatca |
2055846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 2098173 - 2097963
Alignment:
| Q |
32 |
gattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagctacaataatatcaat |
131 |
Q |
| |
|
||||||| | || ||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| || || ||||||||| |
|
|
| T |
2098173 |
gattgattttagcaacaacattctgcagggtcagttgccaagggcattggtaaatagcagaagcctagagttctttgatgttagttataacaatatcaat |
2098074 |
T |
|
| Q |
132 |
gattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggtgctctggcaacatga |
231 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2098073 |
gattcatttccattatggatgaaagatttacccgagttgaaggtattgtctttaagtaacaatgaatttcatggagacattaggtgctctgacaacatga |
2097974 |
T |
|
| Q |
232 |
catgcacattt |
242 |
Q |
| |
|
||||||||||| |
|
|
| T |
2097973 |
catgcacattt |
2097963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 2138072 - 2137831
Alignment:
| Q |
17 |
aaattgccttcaaaagattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttagc |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| | || |||| | |||||| ||||||| | |||| ||||| ||||||||||||||| |||| |
|
|
| T |
2138072 |
aaattcccttcaaaagattgatctcagtaacaacaatattcacggtcggttgccaatggcattgatcaacaacagaaggctagaattctttgatattagt |
2137973 |
T |
|
| Q |
117 |
tacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggt |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2137972 |
tacaacaatatcaatgattcatttccattttggatgggagaattacccgagttgaaagtattgtctttaagtaacaataaatttcatggagacattaggt |
2137873 |
T |
|
| Q |
217 |
gctctggcaacatgacatgcacattttctaagcttcatatca |
258 |
Q |
| |
|
||||| |||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
2137872 |
gctctagcaacatgacatgcacgtttcccaagcttcacatca |
2137831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 2692490 - 2692727
Alignment:
| Q |
16 |
aaaattgccttcaaaagattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgttag |
115 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||| ||||| |||||||||||||| |
|
|
| T |
2692490 |
aaaattcccttcagcagattgatctcagtaacaacaaactgcagggtcagttgccaagggcattggtcaacaacagaaggctagagttctttgatgttag |
2692589 |
T |
|
| Q |
116 |
ctacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattagg |
215 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| ||||||| || || ||| | ||||| |||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
2692590 |
ttataacaatatcaatgattcatttccattctggatgggagaattgcccgagctaaaggtgctgtctttaagtaacaacgaatttcatggagacattagg |
2692689 |
T |
|
| Q |
216 |
tgctctggcaacatgacatgcacattttctaagcttca |
253 |
Q |
| |
|
||| || | ||||||||||||||||| | |||||||| |
|
|
| T |
2692690 |
tgccctatctacatgacatgcacatttcccaagcttca |
2692727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 2125420 - 2125317
Alignment:
| Q |
155 |
agatttacctgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggtgctctggcaacatgacatgcacattttctaagcttcat |
254 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
2125420 |
agatttacccgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggtgctctggcaacatgacatgcacatttcccaagcttcac |
2125321 |
T |
|
| Q |
255 |
atca |
258 |
Q |
| |
|
|||| |
|
|
| T |
2125320 |
atca |
2125317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 1697428 - 1697598
Alignment:
| Q |
14 |
tcaaaattgccttcaaaagattgatctcagtaacaacaatctgcagggtcagatgccaagggcattggtaaacagcagaattctagaattctttgatgtt |
113 |
Q |
| |
|
|||||||| |||||| | |||||| ||||| ||||| ||||||||||||||| ||||||| |||||||| ||| |||||| ||||| |||||||||||| |
|
|
| T |
1697428 |
tcaaaattcccttcagatgattgacctcagcaacaataatctgcagggtcagttgccaagagcattggttaactgcagaaggctagagttctttgatgtt |
1697527 |
T |
|
| Q |
114 |
agctacaataatatcaatgattcatttccattctggctgggagatttacctgagttgaaggtattgtcttt |
184 |
Q |
| |
|
||| | || |||||||| |||| |||||||||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
1697528 |
agccataacaatatcaaagatttgtttccattctggctgggaactatacctgagttgaaggtattggcttt |
1697598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 2104344 - 2104250
Alignment:
| Q |
164 |
tgagttgaaggtattgtctttaagtaacaatgcattccatggagacattaggtgctctggcaacatgacatgcacattttctaagcttcatatca |
258 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||| ||||||| |||||||||| |||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
2104344 |
tgagttgaaggtattatctttacgtaacaatgaatttcatggagtcattaggtgccctggaaacatgacatgcacatttacaaagcttcatatca |
2104250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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