View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_low_37 (Length: 255)
Name: NF14468_low_37
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 41337155 - 41337385
Alignment:
| Q |
10 |
gcacagatcaaatttattggtgcacttagtgatcattcataattgtgtttgatatatatttcttcaccataatttcctgaaaaatataggaattaggaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41337155 |
gcacagatcaaatttattggtgcacttagtgatcattcataattgtgtttgatatatatttcttcactgtaatttcctgaaaaatataggaattaggaaa |
41337254 |
T |
|
| Q |
110 |
tgctatcaaactttgtaatatggcannnnnnnaaaaccattataaaaagtgccaatgcttgttttattactttcattttaagtagttgaaggatgttcaa |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41337255 |
tgctatcaaactttgtaatatggcattttttttaaaccattataaaaagtgccaatgcttgttttattgctttcattttaagtagttgaaggatgttcaa |
41337354 |
T |
|
| Q |
210 |
cttcaccggtgaggttaaggtgtaccttact |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41337355 |
cttcaccggtgaggttaaggtgtaccttact |
41337385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University