View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_low_4 (Length: 599)
Name: NF14468_low_4
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_4 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 11113447 - 11112870
Alignment:
| Q |
1 |
acaatatacatatgctttcaaattggacaagttttctttcattaatacaataaaagaacagtacatacatactcattcaatatagtggttcttattctct |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11113447 |
acaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaagaacagtacatacatactcattcaatatagtggttcttattctct |
11113348 |
T |
|
| Q |
101 |
tagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagtta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
11113347 |
tagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaataaaaaaaagatatggaaagacacttgtgtgttgtgttagtta |
11113248 |
T |
|
| Q |
201 |
cttagtttgagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgtcaccttcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
11113247 |
cttagtttgagaggaacaattcgaagtggttgagcctcccgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgccaccttcaa |
11113148 |
T |
|
| Q |
301 |
gctcccaatcaaatgagttaattaatgaacccaacattaacatcaacatcctattagccaattgcaaacctggacaaattctcctcccaccaccaaatgg |
400 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| |||||||||||| | ||||||| |||||||||| |||||||||||||||| ||| |
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|
| T |
11113147 |
gctcccaatcaaatgagttaatcagtgaacccaacattaacattaacatcctattacc--attgcaa--ctggacaaat-ctcctcccaccaccaa-tgg |
11113054 |
T |
|
| Q |
401 |
agcaacctcataattccttcctttgacataaatatccgatcccataaacctttctggagagaacaaagttgggttatcccacaaggttggatccatacaa |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||| |
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|
| T |
11113053 |
agcaacctcataattccttcctttcacatcaatatccgatcccataaacctttctggagagaacaaagttggattctcccacaatgttggatccttacaa |
11112954 |
T |
|
| Q |
501 |
attgtccacatattaactagcacttgtgcatcttttggaatagtgtagccacatatctcaacatctctctcagcttttcttggt |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11112953 |
attgtccacatattaactagcacttgtgcatcttttggaatagtgtagccacatatctcaacatctctctcagcttttcttggt |
11112870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 117 - 584
Target Start/End: Original strand, 11106159 - 11106616
Alignment:
| Q |
117 |
aataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
11106159 |
aataataagcaatgacccttaacatagcaagtaaaaatgaa---gcaaaagatatggaaaaacactt-------gtgttagttacttagtttgagaggaa |
11106248 |
T |
|
| Q |
217 |
caattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgtcaccttcaagctcccaatcaaatga |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11106249 |
caattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgccaccttcaagctcccaatcaaatga |
11106348 |
T |
|
| Q |
317 |
gttaattaatgaacccaacattaacatcaacatcctattagccaattgcaaacctggacaaattctcctcccaccaccaaatggagcaacctcataattc |
416 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11106349 |
gttaatcagtgaacccaacattaacattaacatcctattagccaattgcaaacctggacaaattctcctcccaccaccaaatggagcaacctcataattc |
11106448 |
T |
|
| Q |
417 |
cttcctttgacataaatatccgatcccataaacctttctggagagaacaaagttgggttatcccacaaggttggatccatacaaattgtccacatattaa |
516 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
11106449 |
cttcctttcacatcaatatccgatcccataaacctttctggagagaacaaagttggattctcccacaatgttggatccttacaaattgtccacatattaa |
11106548 |
T |
|
| Q |
517 |
ctagcacttgtgcatcttttggaatagtgtagccacatatctcaacatctctctcagcttttcttggt |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11106549 |
ctagcacttgtgcatcttttggaatagtgtagccacatatctcaacatctctctcagcttttcttggt |
11106616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 209 - 579
Target Start/End: Complemental strand, 46927831 - 46927461
Alignment:
| Q |
209 |
gagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgtcaccttcaagctcccaa |
308 |
Q |
| |
|
|||||||| ||||||||| |||| || ||||| ||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
46927831 |
gagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaatttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaa |
46927732 |
T |
|
| Q |
309 |
tcaaatgagttaattaatgaacccaacattaacatcaacatcctattagccaattgcaaacctggacaaattctcctcccaccaccaaatggagcaacct |
408 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| || |
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|
| T |
46927731 |
tcaaaagagttaactaatgaacccaacattaacaataacatcctattagccaattgcaaaccaggacaaattctcctaccaccaccgaatggcacaagct |
46927632 |
T |
|
| Q |
409 |
cataattccttcctttgacataaatatccgatcccataaacctttctggagagaacaaagttgggttatcccacaaggttggatccatacaaattgtcca |
508 |
Q |
| |
|
|| |||||||||||||||||| |||||| || || | ||||||||||||||||||||| ||||| || ||||||||| | | |||| ||||||| ||||| |
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| T |
46927631 |
caaaattccttcctttgacatcaatatcagaccctaaaaacctttctggagagaacaatgttggattctcccacaagttagcatccctacaaatagtcca |
46927532 |
T |
|
| Q |
509 |
catattaactagcacttgtgcatcttttggaatagtgtagccacatatctcaacatctctctcagcttttc |
579 |
Q |
| |
|
| ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
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|
| T |
46927531 |
tacattaactagtacttgtgaatcttttggaataatgtagccacttatctcaacatttctctcagcttttc |
46927461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 212 - 577
Target Start/End: Complemental strand, 46934698 - 46934333
Alignment:
| Q |
212 |
aggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgtcaccttcaagctcccaatca |
311 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
46934698 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcaccttcaagcttccaatca |
46934599 |
T |
|
| Q |
312 |
aatgagttaattaatgaacccaacattaacatcaacatcctattagccaattgcaaacctggacaaattctcctcccaccaccaaatggagcaacctcat |
411 |
Q |
| |
|
|| ||||| | ||| || ||||||||||||| || |||||||||||||||||| || || || || |||| | ||| |||||||||| ||| |||| |
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|
| T |
46934598 |
aacgagttgactaacgaccccaacattaacagcagcatcctattagccaattgtaagccagggcatattcgtcgtccagcaccaaatggtacaagctcaa |
46934499 |
T |
|
| Q |
412 |
aattccttcctttgacataaatatccgatcccataaacctttctggagagaacaaagttgggttatcccacaaggttggatccatacaaattgtccacat |
511 |
Q |
| |
|
|||||| |||||||||| ||| || ||||||| ||||||||||| |||||||||||||| || ||| | || ||||| | | ||| ||||||| |
|
|
| T |
46934498 |
aattccggcctttgacatcaatgtctgatcccaagaacctttctggggagaacaaagttggattcaaccaaatagtgggatctctcccaatagtccacac |
46934399 |
T |
|
| Q |
512 |
attaactagcacttgtgcatcttttggaatagtgtagccacatatctcaacatctctctcagcttt |
577 |
Q |
| |
|
|||||| | ||| |||||||| || || ||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
46934398 |
attaaccatcacctgtgcatccttcgggatagtgtagccacctatgtcaacattcctctcagcttt |
46934333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 397
Target Start/End: Original strand, 13789567 - 13789711
Alignment:
| Q |
253 |
caaatttatcatccatgttcatatcttctggtttcatgtcaccttcaagctcccaatcaaatgagttaattaatgaacccaacattaacatcaacatcct |
352 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| || |||| |||| ||||||||||| | ||||| || |||||||||| || | ||| | ||| |
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|
| T |
13789567 |
caaatttatcatccatattcatatcctcaggtttaattccaccgacaagttcccaatcaaaacaattaataaacaaacccaacatcaaaaacaaaaccct |
13789666 |
T |
|
| Q |
353 |
attagccaattgcaaacctggacaaattctcctcccaccaccaaa |
397 |
Q |
| |
|
| |||||||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
13789667 |
aatagccaatggtaaaccaggacaaattcttctcccaccaccaaa |
13789711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 534 - 584
Target Start/End: Original strand, 2001 - 2051
Alignment:
| Q |
534 |
tttggaatagtgtagccacatatctcaacatctctctcagcttttcttggt |
584 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2001 |
tttggaatagtgtaaccacatatctcaacatctctctcagcttttcttggt |
2051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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