View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14468_low_8 (Length: 483)
Name: NF14468_low_8
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14468_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 5810626 - 5811097
Alignment:
| Q |
1 |
acagcccttatgcattgtgccacattgtatccatcatcaaattgatcccaattatcgagagcattccaatttacttcagaaacctctaatcgactgatgg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810626 |
acagcccttatgcattgtgccacattgtatccatcattaaaatgatcccaattgtcaagagcattccaatttacttcagaaacctctaatcgactgatgg |
5810725 |
T |
|
| Q |
101 |
agaatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattcc |
200 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810726 |
agaatgatccttcggtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattcc |
5810825 |
T |
|
| Q |
201 |
ctgcggcataataatatgcatattaatagttaannnnnnnn-cttcaaaattttggaattttttctcatattcacccacgtatttattgtgttctatgac |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5810826 |
ctgcggcataataatatgcatattaatagttaatttttttttcttcaaaattttggaatttt-tctcatattcacccacgtatttattgtgttctatgac |
5810924 |
T |
|
| Q |
300 |
cattttctaaattaatatgaacaagaaaaaattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagac |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810925 |
cattttctaaattaatatgaacaagaaaaaattatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagac |
5811024 |
T |
|
| Q |
400 |
tccttgcttgatggatcactgttttttcgtcctaaaaatgttagaatcatgtgaccaccttcaactagttctt |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5811025 |
tccttgcttgatggatcactgttttttcgtcctaaaaatgttagaatcatgtgaccaccttcaactagttctt |
5811097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 27736007 - 27736168
Alignment:
| Q |
49 |
caattatcgagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatg |
148 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||| | ||||| |||||||||||| ||||||||||||||| || ||||||||||||| |
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| T |
27736007 |
caatcatcaagagcattccaattaacttcagaaacctccaatttattgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatg |
27736106 |
T |
|
| Q |
149 |
gataatagttagggatgttgaaactattgagtttctcttggtcaatgattccctgcggcata |
210 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||| || ||||||||||||| ||||| |
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|
| T |
27736107 |
gataataattagggatgttgaaagtattgattttctcttcgttaatgattccctgcagcata |
27736168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 27736240 - 27736370
Alignment:
| Q |
342 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcctaaaaatgtt |
441 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| | ||| | |||||||| |||| |
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|
| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
|
| Q |
442 |
agaatcatgtgaccaccttcaactagttctt |
472 |
Q |
| |
|
|||||||| ||| | |||||||||| ||||| |
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|
| T |
27736340 |
agaatcatttgagctccttcaactaattctt |
27736370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27735926 - 27735963
Alignment:
| Q |
1 |
acagcccttatgcattgtgccacattgtatccatcatc |
38 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
27735926 |
acagccctaatgcattgtgccatattgtatccatcatc |
27735963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 472
Target Start/End: Original strand, 32627333 - 32627472
Alignment:
| Q |
333 |
atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct |
432 |
Q |
| |
|
|||||| | ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||| | |||||| |||| |
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|
| T |
32627333 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct |
32627432 |
T |
|
| Q |
433 |
aaaaatgttagaatcatgtgaccaccttcaactagttctt |
472 |
Q |
| |
|
| |||||||| ||||||| ||| |||||||||| ||||| |
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|
| T |
32627433 |
acaaatgttataatcatgcaacccccttcaactatttctt |
32627472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 416
Target Start/End: Original strand, 32703480 - 32703566
Alignment:
| Q |
330 |
attatcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatc |
416 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||| |||||||||| | |||||||| ||||| | |||| |||||||||||||| |
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|
| T |
32703480 |
attatcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatc |
32703566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 32708923 - 32709047
Alignment:
| Q |
342 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgt---tttttcgtcctaaaaat |
438 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||| | | |||||||||| || || ||| |||||| |||||||||| |
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| T |
32708923 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct--atacttc-ttgtcactttttcttcctaaaaat |
32709019 |
T |
|
| Q |
439 |
gttagaatcatgtgaccaccttcaacta |
466 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
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|
| T |
32709020 |
gttagaatcatgcgaccaccttcaacta |
32709047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 32627032 - 32627116
Alignment:
| Q |
103 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctctt |
187 |
Q |
| |
|
|||||||||||||| | ||||||||| | || |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
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|
| T |
32627032 |
aatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctctt |
32627116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 32708666 - 32708779
Alignment:
| Q |
58 |
agagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagt |
157 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| | || || |||||||||||| || | |
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|
| T |
32708666 |
agagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtatt |
32708765 |
T |
|
| Q |
158 |
tagggatgttgaaa |
171 |
Q |
| |
|
||||||||||||| |
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|
| T |
32708766 |
gagggatgttgaaa |
32708779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 7297160 - 7297212
Alignment:
| Q |
103 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataata |
155 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
7297160 |
aatgatccttcattgagaacttctaactcaacttcatatggtgatggataata |
7297212 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32702704 - 32702743
Alignment:
| Q |
1 |
acagcccttatgcattgtgccacattgtatccatcatcaa |
40 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32702704 |
acagcccttatgcattgtgccacatcgtatccattatcaa |
32702743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 32626930 - 32626958
Alignment:
| Q |
10 |
atgcattgtgccacattgtatccatcatc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32626930 |
atgcattgtgccacattgtatccatcatc |
32626958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 20117983 - 20117882
Alignment:
| Q |
103 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccct |
202 |
Q |
| |
|
||||| |||||||| ||||||||||| | || |||| ||||||||||||||||||||||| |||||| ||||||| |||||| || |||||||||| |
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|
| T |
20117983 |
aatgacccttcagttagaacttccaatttcacttcagttggagatggataatagttagggagattgaaagtattgagggtctcttcttctatgattccct |
20117884 |
T |
|
| Q |
203 |
gc |
204 |
Q |
| |
|
|| |
|
|
| T |
20117883 |
gc |
20117882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 21941867 - 21941968
Alignment:
| Q |
103 |
aatgatccttcagtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctcttggtcaatgattccct |
202 |
Q |
| |
|
|||||| ||||||| |||||||||| | | ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||| || |||||||||| |
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|
| T |
21941867 |
aatgattcttcagttagaacttccacttttatttcagatggagatggaaaatagataggaatgttgaaagtattgagtttctcttcttctatgattccct |
21941966 |
T |
|
| Q |
203 |
gc |
204 |
Q |
| |
|
|| |
|
|
| T |
21941967 |
gc |
21941968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 21943082 - 21943132
Alignment:
| Q |
337 |
tagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaa |
387 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21943082 |
tagtctacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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