View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14468_low_9 (Length: 477)

Name: NF14468_low_9
Description: NF14468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14468_low_9
NF14468_low_9
[»] chr5 (1 HSPs)
chr5 (24-477)||(3331080-3331555)


Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 24 - 477
Target Start/End: Original strand, 3331080 - 3331555
Alignment:
Q  24 agtaaatgcaataatgaaacaacataaaatgaagacgttaccttgaatccagaaacataaaatgtagtgtctcacatgctaaagcaagcctgattatggc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3331080 agtaaatgcaataatgaaacaacataaaatgaagacgttaccttgaatccagaaacataaaatgtagtgtctcacaggctaaagcaagcctgattatggc 3331179  T
Q  124 tgatcatgcagatcaaatgcccatacatatgatcaagaaataattaacatgcaaaaatgagttttcaaacacttcgtcaagtgaatgcatgaaggcacaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3331180 tgatcatgcagatcaaatgcccatacatatgatcaagaaataattaacatgcaaaaatgagttttcaaacacttcatcaagtgaatgcatgaaggcacaa 3331279  T
Q  224 caacttgctattattcaatgttctaagcttagaacacttctctgccgtcattgtctcattatacttctttgcattcattcctcgtactacttttcttgt- 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3331280 caacttgctattattcaatgttctaagcttagaacacttctctgccgtcattgtctcattatacttctttgcattcattcctcgtactacttttcttgta 3331379  T
Q  323 agtaacttgtactgtttcattcaccttaaagtactctata---------------------taggaattaaatgcaccaaagtactaattttattgatcc 401  Q
    ||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||    
T  3331380 agtaacttgtactgtttcattcaccttaaagtactctatatatatatatatatatatgtggtaggaattaaatgcaccaaagtactaattttattgatcc 3331479  T
Q  402 tctcacagaatatagaataaaattaaacaaactcaccgaggatagataataataataaggatacatcaatttaatt 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3331480 tctcacagaatatagaataaaattaaacaaactcaccgaggatagataataataataaggatacatcaatttaatt 3331555  T

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