View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14469_high_3 (Length: 456)

Name: NF14469_high_3
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14469_high_3
NF14469_high_3
[»] chr2 (15 HSPs)
chr2 (17-440)||(28214379-28214802)
chr2 (17-440)||(28221482-28221905)
chr2 (18-440)||(32310053-32310456)
chr2 (18-440)||(32564364-32564767)
chr2 (18-272)||(32786819-32787075)
chr2 (18-203)||(32814027-32814212)
chr2 (53-282)||(32306057-32306288)
chr2 (347-440)||(32787130-32787223)
chr2 (341-429)||(32814336-32814424)
chr2 (341-438)||(32305922-32306019)
chr2 (55-171)||(32316568-32316684)
chr2 (15-171)||(28174552-28174706)
chr2 (12-123)||(28171391-28171502)
chr2 (12-95)||(28183014-28183099)
chr2 (232-282)||(32814248-32814298)


Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 28214379 - 28214802
Alignment:
Q  17 ttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaa 116  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28214379 ttgttgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaa 28214478  T
Q  117 tgaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtga 216  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  28214479 tgaaatcgcaaccgatttttccaatgttgtgttctcctttagattatcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga 28214578  T
Q  217 tcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgca 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28214579 tcgtaatttcagctgcgacatcatggtttttgaagtctttgtgaccacagttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgca 28214678  T
Q  317 atgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28214679 atgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgctttgaatcct 28214778  T
Q  417 ctaagattgaagaggtgcagtgtg 440  Q
    ||||||||||||||||||||||||    
T  28214779 ctaagattgaagaggtgcagtgtg 28214802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 28221905 - 28221482
Alignment:
Q  17 ttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaa 116  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28221905 ttgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtagagcctttgctgaa 28221806  T
Q  117 tgaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtga 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  28221805 tgaaatcgcaacagatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga 28221706  T
Q  217 tcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgca 316  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28221705 tcgcaatttcagctgcgacatcatggtttttgaagtctctgtggccacagttgaggtcgcatcaggtcaactgtcaacagttcgcaataacaggattgca 28221606  T
Q  317 atgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcct 416  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28221605 atgcggccaagatacaaacctttttcatattataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcattgaatcct 28221506  T
Q  417 ctaagattgaagaggtgcagtgtg 440  Q
    ||||||||||||||||||||||||    
T  28221505 ctaagattgaagaggtgcagtgtg 28221482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 32310456 - 32310053
Alignment:
Q  18 tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat 117  Q
    ||||||||||||||||| |||| |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  32310456 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacagcctttgctgaat 32310357  T
Q  118 gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtg-- 215  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| | |||||||||||||       |||||      
T  32310356 gaaatcgcaaccgatttttccaatgttgtgtcctcctttagattatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgat 32310257  T
Q  216 atcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgc 315  Q
    ||| |||| |||||| |||||||| ||||||| | ||||||||||||||| ||||||  ||||||||       ||||||||||              ||    
T  32310256 atcacaatctcagctacgacatcaaggtttttcatgtctttgtgaccacagttgaggctgcatcagg------ctcaacagttc--------------gc 32310177  T
Q  316 aatgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcc 415  Q
    ||||| |||| || | | ||| || |||||  ||| || ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  32310176 aatgcagccacgaaatatacc-ttatcatatcatattcttaaatgcataaatgtaaagtaatttaccaaggaggctgactgtttcacgtgcgttgaatcc 32310078  T
Q  416 tctaagattgaagaggtgcagtgtg 440  Q
    |||||| ||||||||||||||||||    
T  32310077 tctaaggttgaagaggtgcagtgtg 32310053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 32564364 - 32564767
Alignment:
Q  18 tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat 117  Q
    ||||||||||||||||| |||| |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  32564364 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaat 32564463  T
Q  118 gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtg-- 215  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| | |||||||||||||       |||||      
T  32564464 gaaatcgcaaccgatttttccaatgttgtgtcctcctttagattatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgat 32564563  T
Q  216 atcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgc 315  Q
    ||| |||| |||||| |||||||| ||||||| | ||||||||||||||| ||||||  ||||||||       ||||||||||              ||    
T  32564564 atcacaatctcagctacgacatcaaggtttttcatgtctttgtgaccacagttgaggctgcatcagg------ctcaacagttc--------------gc 32564643  T
Q  316 aatgcggccaagatacaaacctttttcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcc 415  Q
    ||||| |||| || | | ||| || |||||  ||| || ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  32564644 aatgcagccacgaaatatacc-ttatcatatcatattcttaaatgcataaatgtaaagtaatttaccaaggaggctgactgtttcacgtgcgttgaatcc 32564742  T
Q  416 tctaagattgaagaggtgcagtgtg 440  Q
    |||||| ||||||||||||||||||    
T  32564743 tctaaggttgaagaggtgcagtgtg 32564767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 32786819 - 32787075
Alignment:
Q  18 tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat 117  Q
    ||||||||||||||||| |||| |||||||  || ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||     
T  32786819 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaaa 32786918  T
Q  118 gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggtttt--nnnnnnngtgtg 215  Q
    ||||||||||||||||||||||||||||||| | |||  || |||||||||||||||||||||||||||| | |||||||||||||         ||| |    
T  32786919 gaaatcgcaaccgatttttccaatgttgtgtcctcctgtagtttatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatatgtggg 32787018  T
Q  216 atcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgagg 272  Q
    ||| |||| |||||| |||||||| ||||||||| ||||||||||||||| ||||||    
T  32787019 atcacaatctcagctacgacatcagggtttttgatgtctttgtgaccacagttgagg 32787075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 32814027 - 32814212
Alignment:
Q  18 tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat 117  Q
    ||||||||||||||||| |||| |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  32814027 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaat 32814126  T
Q  118 gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggtttt 203  Q
    ||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||| | ||| |||||||||    
T  32814127 gaaatcgcaaccgatttttccaatgttgtgtcctcctttaaattatcaagaaaccaacagatctcattagccttatacaaggtttt 32814212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 53 - 282
Target Start/End: Complemental strand, 32306288 - 32306057
Alignment:
Q  53 aaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtgcac 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||| | |    
T  32306288 aaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaatcacaaccgatttttccaaggttgtgtcctc 32306189  T
Q  153 cttcagattatcaagaaaccaacagatctcattagtcatattcaaggttt--tnnnnnnngtgtgatcgcaatttcagctgcgacatcatggtttttgaa 250  Q
    ||  | |||||| |||||||||||||||||||||  | ||||||||||||          ||| |||| |||| |||||| |||||||| |||||||||     
T  32306188 ctgtatattatccagaaaccaacagatctcattaaccctattcaaggtttgaaaaattacgtgagatcacaatctcagctacgacatcagggtttttgat 32306089  T
Q  251 gtctttgtgaccacacttgaggtcgcatcagg 282  Q
    ||||||| ||||||| ||||||  ||||||||    
T  32306088 gtctttgcgaccacaattgaggctgcatcagg 32306057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 347 - 440
Target Start/End: Original strand, 32787130 - 32787223
Alignment:
Q  347 tataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtg 440  Q
    |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32787130 tatattcataaatgcataaatgtaaagtaatttaccaaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtg 32787223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 429
Target Start/End: Original strand, 32814336 - 32814424
Alignment:
Q  341 tcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaaga 429  Q
    ||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32814336 tcatattatattcatgaatgcataagtgtaaagtaatttaccaaggaggctgactgtttcccgtgcgttgaatcctctaagattgaaga 32814424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 32306019 - 32305922
Alignment:
Q  341 tcataatataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtg 438  Q
    ||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  32306019 tcatattatattcataaatgcataagtgtaaagtaatttatcaaggaggctgactgtttcatgcgcgttgaatcctctaagattgaagaggtgcagtg 32305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 32316684 - 32316568
Alignment:
Q  55 atcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtgcacct 154  Q
    ||||||||||||| ||| |||| |||| | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||| | |||    
T  32316684 atcgagaggtatattcgagtctagttgtcatgttcctttaaagtcgtacaacctttgctaaatgaaatcgcaaccgattttttcaatgttgtgtcctcct 32316585  T
Q  155 tcagattatcaagaaac 171  Q
    | | |||||||||||||    
T  32316584 ttatattatcaagaaac 32316568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 28174706 - 28174552
Alignment:
Q  15 tcttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatact-cgggtctggttgccctgttccttgaaagttgtacagcctttgct 113  Q
    |||||||||| ||||||||| |||| ||||||| ||| ||||| |||| |||||  | ||||||||||| ||||||||| |||||||||||| |||||      
T  28174706 tcttgttgtctggacagtttagcctcatctgactaagaaaatcaagagctatacgacaggtctggttgcgctgttcctttaaagttgtacagactttgtc 28174607  T
Q  114 gaatgaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaac 171  Q
     ||| ||||| |||| |||||| ||||||||||||   |||||| |||||||||||||    
T  28174606 aaatcaaatcacaactgattttgccaatgttgtgt---ccttcacattatcaagaaac 28174552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 28171502 - 28171391
Alignment:
Q  12 tattcttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttg 111  Q
    |||||||||||||  ||||||||||||| |||| || ||| ||||| ||| |||||||| ||||||||||| |||||||||||||| ||||||| ||| |    
T  28171502 tattcttgttgtcttgacagttttgcctcatcttactaagcaaatcaagaagtatactcaggtctggttgcgctgttccttgaaagatgtacagtcttcg 28171403  T
Q  112 ctgaatgaaatc 123  Q
      ||||||||||    
T  28171402 tcgaatgaaatc 28171391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 28183099 - 28183014
Alignment:
Q  12 tattcttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagagg--tatactcgggtctggttgccctgttccttgaa 95  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| ||| |  ||||||| | || ||||||| |||||||||||    
T  28183099 tattcttgttgtctggacagttttgcctcatctgactaaggaaatcaagaagtatatactcagatccggttgccttgttccttgaa 28183014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 32814248 - 32814298
Alignment:
Q  232 cgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcagg 282  Q
    |||||||| ||||||||| ||||||||||||||| ||||||  ||||||||    
T  32814248 cgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcagg 32814298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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