View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14469_low_1 (Length: 606)
Name: NF14469_low_1
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14469_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Complemental strand, 2178888 - 2178311
Alignment:
| Q |
18 |
ggagtaagttattcgttagtaaaaacaggcacttcaaatgctttggaacccaagaccatctgtattttcttttt-aacatatttctgagtggatgtttcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2178888 |
ggagtaagttattcgttagtaaaaacaggcacttcaaatgctttggaacccaagaccatctgtattttcttttttaacatatttctgagtggatgtttcg |
2178789 |
T |
|
| Q |
117 |
ggacagaagcaggtattttaccatgatcaatcttttccacaacctgtgttgggtgcagccaacgctaagccgtaacattgtgaccaatcatttgacaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2178788 |
ggacagaagcaggtattttaccatgatcaatcttttccacaacctgtgttgggtgcagccaacgctaagccgtaacatcgtgaccaatcatttgacaatg |
2178689 |
T |
|
| Q |
217 |
tgaacaataatcagggagccattcataaacaacttctaactttttcttctaacttgaaagcaaat----ctctctcactcaaccataatttcatcaaata |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
2178688 |
tgaacaataatcagggagccattcataaacaacttctaactttttcttctaacttgaaagcaaattaatctctctcgctcaaccataatttcatcaaata |
2178589 |
T |
|
| Q |
313 |
tacgacgtgaaaaatcaatgtcaactaaaacacgagcataattaccaaaaaattcttttttgtgcagcatatcaataaccaaaggtgtgcctattacgcc |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2178588 |
tacggtgtgaaaaatcaatgtcaactaaaacacgagcataattaccaaaaa-ttcttttttgtgcagcatatcaataaccaaaggtgtacctattacgcc |
2178490 |
T |
|
| Q |
413 |
agcaatttcaaggagggtgcaatcgtgccaatactcttgaggtaattccatcagtccgatccaaacctgggcacatgagtttgactttgagagtgtttat |
512 |
Q |
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| T |
2178489 |
agcaatttcgaggagggtgcaatcgtgccaatactcttgaggtaattccatcagtccgatccaaacctgggcacatgagtttgactttgagagtgtttat |
2178390 |
T |
|
| Q |
513 |
caaaatcattcgtctactctgagagccgaaccaaccttggtttcatgttaacggtgctttgtgaccaacccaacctatg |
591 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178389 |
caaaatcattcgtctactctgagagccaaaccaaccttggtttcatgttaacggtgctttgtgaccaacccaacctatg |
2178311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 341
Target Start/End: Original strand, 13170262 - 13170402
Alignment:
| Q |
188 |
gtaacattgtgaccaatcatttgacaatgtgaacaataatcagggagccattcataaacaacttctaactttttcttctaacttgaaagcaaatctctct |
287 |
Q |
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||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| ||| |
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| T |
13170262 |
gtaacatcgtgaccaatgatttgacaatgtgaacaataagtagggagccattcataaaaaa-------------cttctaacttgcaagcaaattcctca |
13170348 |
T |
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| Q |
288 |
cactcaaccataatttcatcaaatatacgacgtgaaaaatcaatgtcaactaaa |
341 |
Q |
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| T |
13170349 |
cactcaaccataatttcatcaaatacacggtgtgaaaaataaatgccaactaaa |
13170402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 13170138 - 13170198
Alignment:
| Q |
32 |
gttagtaaaaacaggcacttcaaatgctttgga--acccaagaccatctgtattttctttt |
90 |
Q |
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| T |
13170138 |
gttagtaataacaggcacttaaaatgctttggaggacccaacaccatctgtattttgtttt |
13170198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 15623572 - 15623533
Alignment:
| Q |
291 |
tcaaccataatttcatcaaatatacgacgtgaaaaatcaa |
330 |
Q |
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| T |
15623572 |
tcaaccataatttcatcaaatatacgacaagaaaaatcaa |
15623533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 16470162 - 16470241
Alignment:
| Q |
167 |
gggtgcagccaacgctaagccgtaacattgtgaccaatcatttgacaatgtgaacaataatcagggagccattcataaac |
246 |
Q |
| |
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||||| |||||||| |||||||||||||||| ||||||| |||||| ||||||| ||||| | |||| ||||||||| |
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| T |
16470162 |
gggtgtagccaacgacaagccgtaacattgtgctcaatcatctgacaacgtgaacattaatcttgtagccgttcataaac |
16470241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 30757829 - 30757895
Alignment:
| Q |
291 |
tcaaccataatttcatcaaatatacgacgtgaaaaatcaatgtcaactaaaacacgagcataattac |
357 |
Q |
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|||||||| ||||||||||| ||| | | |||||||||| |||||||| |||||||||||||||| |
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| T |
30757829 |
tcaaccattatttcatcaaagatatggagggaaaaatcaacatcaactaagacacgagcataattac |
30757895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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