View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14469_low_4 (Length: 424)

Name: NF14469_low_4
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14469_low_4
NF14469_low_4
[»] chr3 (10 HSPs)
chr3 (1-406)||(6859617-6860022)
chr3 (185-406)||(8573073-8573293)
chr3 (163-383)||(7746492-7746712)
chr3 (296-401)||(6233717-6233822)
chr3 (180-285)||(6798904-6799009)
chr3 (182-242)||(6725412-6725472)
chr3 (308-345)||(6241561-6241598)
chr3 (197-242)||(6934161-6934206)
chr3 (308-340)||(6138670-6138702)
chr3 (308-340)||(13283394-13283426)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 6860022 - 6859617
Alignment:
Q  1 cctcttattgagtgtgcaaaatgtgttgcatctggaagcataaaaactgctgatattggacttgagtatatttctcagatttcatcacctcatggtaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6860022 cctcttattgagtgtgcaaaatgtgttgcatctggaagcataaaaactgctgatattggacttgagtatatttctcagatttcatcacctcatggtaatg 6859923  T
Q  101 gtgtacaaagaatggtcacttatttcagtgaagcacttggatacaagatagttgaacatttacctggcgtatacaaagctctcaattcctcgaaaatatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6859922 gtgtacaaagaatggtcacttatttcagtgaagcacttggatacaagatagttaaacatttacctggcgtatacaaagctctcaattcctcgaaaatatc 6859823  T
Q  201 attgtcttcagacgacatccttgttcaaaaatacttctatgatccgtgtccttttttgaagttttcatacctgatcacaaatcaagcgattatcgaatcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6859822 attgtcttcagacgacatccttgttcaaaaatacttctatgatctgtgtccttttttgaagttttcatacctgatcacaaatcaagcaattatcgaatcg 6859723  T
Q  301 atggaacgtgaaaaggtggttcatattattgatctccattgttccgagccagcgcaatggataaatcttatacaaactttaaagaaacgtccgggaggtc 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6859722 atggaacgtgaaaaggtggtgcatattattgatctccattgttccgagccagcacaatggataaatcttatacaaactttaaagaaacgtccgggaggtc 6859623  T
Q  401 cgccct 406  Q
    ||||||    
T  6859622 cgccct 6859617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 185 - 406
Target Start/End: Complemental strand, 8573293 - 8573073
Alignment:
Q  185 attcctcgaaaatatcattgtcttcagacgacatccttgttcaaaaatacttctatgatccgtgtccttttttgaagttttcatacctgatcacaaatca 284  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||    
T  8573293 attcgtcgaaaacatcattgtcttcagacgacatccttgttcagaaatacttctatgaac--tgtccttttttgaagttttcatacctgattacaaatca 8573196  T
Q  285 agcgattatcgaatcgatggaac-gtgaaaaggtggttcatattattgatctccattgttccgagccagcgcaatggataaatcttatacaaactttaaa 383  Q
    ||| ||||| |||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8573195 agcaattattgaatcgttggaaatgtgaaaaggtcgttcatattattgatctccattgttccgagccagctcaatggataaatcttatacaaactttaaa 8573096  T
Q  384 gaaacgtccgggaggtccgccct 406  Q
    |||||||||||||||||| ||||    
T  8573095 gaaacgtccgggaggtccaccct 8573073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 163 - 383
Target Start/End: Original strand, 7746492 - 7746712
Alignment:
Q  163 cctggcgtatacaaagctctcaattcctcgaaaatatcattgtcttcagacgacatccttgttcaaaaatacttctatgatccgtgtccttttttgaagt 262  Q
    ||||| ||||| |||| | | ||||||| ||||| ||| ||||||||||| ||||| |||||| |||||||||||| | | | |||||| ||||||  ||    
T  7746492 cctggtgtataaaaagttattaattccttgaaaacatcgttgtcttcagatgacattcttgttaaaaaatacttctctaaactgtgtccatttttgtggt 7746591  T
Q  263 tttcatacctgatcacaaatcaagcgattatcgaatcgatggaacgtgaaaaggtggttcatattattgatctccattgttccgagccagcgcaatggat 362  Q
    ||||||||| ||| ||||||||||| | | | ||||| || |||  ||||| ||||||||| |||||||||  |||||||||||||||||| |||| ||     
T  7746592 tttcatacccgataacaaatcaagcaaatgttgaatccattgaatatgaaacggtggttcacattattgatgcccattgttccgagccagctcaatagac 7746691  T
Q  363 aaatcttatacaaactttaaa 383  Q
    |||||||| | |||| |||||    
T  7746692 aaatcttagaaaaaccttaaa 7746712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 401
Target Start/End: Original strand, 6233717 - 6233822
Alignment:
Q  296 aatcgatggaacgtgaaaaggtggttcatattattgatctccattgttccgagccagcgcaatggataaatcttatacaaactttaaagaaacgtccggg 395  Q
    |||| |||||| |||||||||||||||| ||||||||||||| |||| |||| ||||  ||||| ||||||||| ||||||||| ||||||| ||| |||    
T  6233717 aatcaatggaatgtgaaaaggtggttcaaattattgatctccgttgtgccgaaccagaccaatgtataaatcttctacaaacttcaaagaaaagtcaggg 6233816  T
Q  396 aggtcc 401  Q
    ||||||    
T  6233817 aggtcc 6233822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 6799009 - 6798904
Alignment:
Q  180 tctcaattcctcgaaaatatcattgtcttcagacgacatccttgttcaaaaatacttctatgatccgtgtccttttttgaagttttcatacctgatcaca 279  Q
    |||||| ||||  |||| ||||||||||||||| |||||||||||||| |||||||||||||    |||||| ||||| |||| ||||||||  ||||||    
T  6799009 tctcaagtcctaaaaaacatcattgtcttcagaagacatccttgttcagaaatacttctatgcattgtgtcccttttttaagtgttcataccgaatcaca 6798910  T
Q  280 aatcaa 285  Q
    ||||||    
T  6798909 aatcaa 6798904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 6725472 - 6725412
Alignment:
Q  182 tcaattcctcgaaaatatcattgtcttcagacgacatccttgttcaaaaatacttctatga 242  Q
    |||||| ||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||    
T  6725472 tcaatttctcgaaaatatcattgttttcagaagacatcctcgttcaaatatacttctatga 6725412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 6241561 - 6241598
Alignment:
Q  308 gtgaaaaggtggttcatattattgatctccattgttcc 345  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  6241561 gtgaaaaggtggttcacattattgatctccatttttcc 6241598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 6934161 - 6934206
Alignment:
Q  197 tatcattgtcttcagacgacatccttgttcaaaaatacttctatga 242  Q
    ||||||||| |||||| |||||||||||| | ||||||||||||||    
T  6934161 tatcattgttttcagaagacatccttgttaagaaatacttctatga 6934206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 6138670 - 6138702
Alignment:
Q  308 gtgaaaaggtggttcatattattgatctccatt 340  Q
    |||||||||||||||| ||||||||||||||||    
T  6138670 gtgaaaaggtggttcacattattgatctccatt 6138702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 13283426 - 13283394
Alignment:
Q  308 gtgaaaaggtggttcatattattgatctccatt 340  Q
    |||||||||||||||| ||||||||||||||||    
T  13283426 gtgaaaaggtggttcacattattgatctccatt 13283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University