View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14469_low_5 (Length: 390)
Name: NF14469_low_5
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14469_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 32835367 - 32834985
Alignment:
| Q |
1 |
aataatcacaagcatcatagtcatagatattaatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtat----aaccacaagcat |
96 |
Q |
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| T |
32835367 |
aataatcacaagcatcatagtcatagatgttaatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtatgtataaccacaagcat |
32835268 |
T |
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| Q |
97 |
cattgtcaaaacgacaaacacacgcagaaatagggacaactatatttatgccaccttgtttatttttactcaattattaatgaaatgtacgagtatctgt |
196 |
Q |
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| T |
32835267 |
cattgtcaaaacgacaaacacacgcagaaatagggacaactatatttatgccaccttgtttgtttttactcaattattaatgaaatgtacgagtatctgt |
32835168 |
T |
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| Q |
197 |
tgattgaagttaattttttaatgctatttttatttatagtatatccaaaaatatcataaatgacatctttaattag-------nnnnnnngaaaagggag |
289 |
Q |
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| T |
32835167 |
tgattgaagttaat-ttttaatgctatttttattta---tatatccaaaaatataataaatgacatctttcagtagttttttttttttttgaaaagggag |
32835072 |
T |
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| Q |
290 |
agtatctgttggcatttttaagagagaagaggagtttaataattataacatgaa-atgtttaatcatgccattttccttcaaaaaat |
375 |
Q |
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| T |
32835071 |
agtatctgttggcatttttaagagagaagaggagtttaataattataacatgaatatgtttaatcatgccattttctttcaaaaaat |
32834985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 32835416 - 32835345
Alignment:
| Q |
32 |
aatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtataaccacaagcatcattgtca |
104 |
Q |
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| T |
32835416 |
aatcaaattaaattgttcactaatgtcacttgcctaataatatatgtat-aataatcacaagcatcatagtca |
32835345 |
T |
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